View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_47 (Length: 300)

Name: NF4381_low_47
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_47
NF4381_low_47
[»] chr2 (24 HSPs)
chr2 (111-284)||(39222854-39223027)
chr2 (111-284)||(39192341-39192514)
chr2 (111-284)||(39198021-39198194)
chr2 (111-232)||(39388996-39389117)
chr2 (115-232)||(39161905-39162022)
chr2 (115-232)||(39207172-39207289)
chr2 (202-284)||(39389129-39389211)
chr2 (111-206)||(39215721-39215813)
chr2 (209-284)||(39161811-39161886)
chr2 (209-284)||(39207308-39207383)
chr2 (209-284)||(39215601-39215676)
chr2 (118-195)||(39421677-39421754)
chr2 (208-284)||(39381509-39381585)
chr2 (149-197)||(39473285-39473333)
chr2 (213-284)||(39468308-39468379)
chr2 (210-284)||(39459221-39459295)
chr2 (134-175)||(39468447-39468488)
chr2 (141-189)||(39137997-39138045)
chr2 (1-32)||(39223100-39223131)
chr2 (130-197)||(39381368-39381435)
chr2 (139-181)||(39370243-39370285)
chr2 (136-197)||(39152694-39152755)
chr2 (136-189)||(39459379-39459432)
chr2 (155-199)||(39397731-39397775)
[»] chr6 (2 HSPs)
chr6 (120-199)||(16113416-16113495)
chr6 (213-284)||(16113268-16113339)
[»] chr5 (2 HSPs)
chr5 (113-202)||(33561107-33561196)
chr5 (202-266)||(33561001-33561065)
[»] chr7 (1 HSPs)
chr7 (142-189)||(19807947-19807994)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 111 - 284
Target Start/End: Complemental strand, 39223027 - 39222854
Alignment:
Q  111 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39223027 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttctccatcaatatattttttccttgacacag 39222928  T
Q  211 gatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39222927 gatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctct 39222854  T

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Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 111 - 284
Target Start/End: Original strand, 39192341 - 39192514
Alignment:
Q  111 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 210  Q
    ||||||||| ||||| || |||||| | |||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||    
T  39192341 taagaggaatagttgcaatgaaattctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatactttttccttgacgcag 39192440  T
Q  211 gatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39192441 gatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctct 39192514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 111 - 284
Target Start/End: Original strand, 39198021 - 39198194
Alignment:
Q  111 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 210  Q
    ||||||||| ||||| || |||||| | |||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||    
T  39198021 taagaggaatagttgcaatgaaattctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatactttttccttgacgcag 39198120  T
Q  211 gatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39198121 gatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctct 39198194  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 39388996 - 39389117
Alignment:
Q  111 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 210  Q
    ||||||||||||||||||| ||||| |||||||||||  |||||||||||||||||||| |||||||||||  |||||| |||||||||||||||| | |    
T  39388996 taagaggaacagttgtaaaaaaattctttcaataaactggatgaataagaacatttaccggattctttttccccatcaaaatattttttccttgactcgg 39389095  T
Q  211 gatccttgacttgtccttcaaa 232  Q
    | ||||| | |||||| |||||    
T  39389096 gctcctttatttgtccatcaaa 39389117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 39162022 - 39161905
Alignment:
Q  115 aggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacaggatc 214  Q
    |||||||||| |||  ||||| ||||||||| | ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||    
T  39162022 aggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctc 39161923  T
Q  215 cttgacttgtccttcaaa 232  Q
    ||| | |||||| |||||    
T  39161922 ctttagttgtccatcaaa 39161905  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 39207172 - 39207289
Alignment:
Q  115 aggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacaggatc 214  Q
    |||||||||| |||  ||||| ||||||||| | ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||    
T  39207172 aggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctc 39207271  T
Q  215 cttgacttgtccttcaaa 232  Q
    ||| | |||||| |||||    
T  39207272 ctttagttgtccatcaaa 39207289  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 39389129 - 39389211
Alignment:
Q  202 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    ||||| ||||||| |||||||| |||||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39389129 ttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatactct 39389211  T

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Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 39215813 - 39215721
Alignment:
Q  111 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgac 206  Q
    |||||||||| ||||||  |||| | ||||||||||| |||||||||||||||||||||||||| | |||||   |||||||||||||||||||||    
T  39215813 taagaggaaccgttgtattgaaactctttcaataaactagatgaataagaacatttacccgattgtgtttct---tcaatatattttttccttgac 39215721  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 39161886 - 39161811
Alignment:
Q  209 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||| | ||| |||||| ||||| ||||    
T  39161886 aggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactct 39161811  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 39207308 - 39207383
Alignment:
Q  209 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||| | ||| |||||| ||||| ||||    
T  39207308 aggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactct 39207383  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 39215676 - 39215601
Alignment:
Q  209 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    ||||||||||||||||||| |||||  ||| |||||||| |||| |||||| |||| | |||||||||||||||||    
T  39215676 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctct 39215601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 39421677 - 39421754
Alignment:
Q  118 aacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatt 195  Q
    |||||||| || |||| | ||||||||||  ||||||||||||||||||||| ||||| ||||| ||||||| |||||    
T  39421677 aacagttgaaatgaaactctttcaataaattagatgaataagaacatttaccagattcattttcctcatcaaaatatt 39421754  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 39381509 - 39381585
Alignment:
Q  208 caggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    ||||||||||| |||||| |||||||  ||| |||||||| |||||||| |||| |||| ||||||||| |||||||    
T  39381509 caggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactcattctct 39381585  T

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Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 39473285 - 39473333
Alignment:
Q  149 agatgaataagaacatttacccgattctttttcttcatcaatatatttt 197  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  39473285 agatgaataagaacatttacccgattctatttcctcatcaaaatatttt 39473333  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 39468379 - 39468308
Alignment:
Q  213 tccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    ||||||||||||||||||| |  ||| |||||||| |||| ||||||||||||| ||||||||  |||||||    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctct 39468308  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 39459295 - 39459221
Alignment:
Q  210 ggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    |||||||||||||||||||||||   ||| |||||||| |||||||| |||||   | |||||||||||||||||    
T  39459295 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctct 39459221  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 39468488 - 39468447
Alignment:
Q  134 ttttttcaataaacaagatgaataagaacatttacccgattc 175  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  39468488 ttttttcaataaactagatgaataagaacatttaccagattc 39468447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 39138045 - 39137997
Alignment:
Q  141 aataaacaagatgaataagaacatttacccgattctttttcttcatcaa 189  Q
    ||||||| ||||||||||||||  ||||||||||||||||| |||||||    
T  39138045 aataaactagatgaataagaactcttacccgattctttttcctcatcaa 39137997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 39223131 - 39223100
Alignment:
Q  1 tcttaaagaattaagtagatcaggttgtaaag 32  Q
    ||||||||||||||||||||||||||||||||    
T  39223131 tcttaaagaattaagtagatcaggttgtaaag 39223100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 39381368 - 39381435
Alignment:
Q  130 gaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttt 197  Q
    |||||| ||||| ||||| | ||||||||||||||||||| |||||||  || || ||||||||||||    
T  39381368 gaaattctttcagtaaactatatgaataagaacatttaccagattcttgctcctcgtcaatatatttt 39381435  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 39370285 - 39370243
Alignment:
Q  139 tcaataaacaagatgaataagaacatttacccgattctttttc 181  Q
    ||||||||| |||||||||||||||||||||| | ||||||||    
T  39370285 tcaataaactagatgaataagaacatttacccaaatctttttc 39370243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 39152755 - 39152694
Alignment:
Q  136 ttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttt 197  Q
    |||||||||||| |||  ||||| |||||||||| |||||| |||| ||||||| |||||||    
T  39152755 ttttcaataaactagacaaataaaaacatttacctgattctatttcctcatcaaaatatttt 39152694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 39459432 - 39459379
Alignment:
Q  136 ttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaa 189  Q
    |||||||||| | | ||||||||||||| |||||||||||| |||| |||||||    
T  39459432 ttttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaa 39459379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 39397731 - 39397775
Alignment:
Q  155 ataagaacatttacccgattctttttcttcatcaatatatttttt 199  Q
    |||||||| |||||||||||||||||| ||||  |||||||||||    
T  39397731 ataagaacctttacccgattctttttcctcattgatatatttttt 39397775  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 16113495 - 16113416
Alignment:
Q  120 cagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 199  Q
    |||||| || ||| |||||||||||||| |||||||| |||||| ||||||||||||||||| || ||||||| ||||||    
T  16113495 cagttgaaatgaatttttttcaataaactagatgaatgagaacacttacccgattctttttcctcgtcaatatgtttttt 16113416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 16113339 - 16113268
Alignment:
Q  213 tccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 284  Q
    |||||||||||| |||||| |  ||| |||||||| |||||||||||| ||||| ||||||||| |||||||    
T  16113339 tccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctct 16113268  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 33561196 - 33561107
Alignment:
Q  113 agaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttcct 202  Q
    ||||||||| || |||  ||||| ||||||||||| ||||||| ||||||||||||| ||||||||||| | ||||||  ||||||||||    
T  33561196 agaggaacacttataataaaattctttcaataaactagatgaagaagaacatttaccggattctttttccttatcaatgcattttttcct 33561107  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 33561065 - 33561001
Alignment:
Q  202 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcaccttt 266  Q
    |||||| |||||||||| ||||||||||| ||  |||| |||||||| |||||||||||||||||    
T  33561065 ttgacataggatccttgccttgtccttcacactgctttacttttaagctgagctccttcaccttt 33561001  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 19807994 - 19807947
Alignment:
Q  142 ataaacaagatgaataagaacatttacccgattctttttcttcatcaa 189  Q
    |||||| |||||||||||||| |||||||||| ||||||| |||||||    
T  19807994 ataaactagatgaataagaacttttacccgatgctttttcctcatcaa 19807947  T

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