View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_49 (Length: 291)
Name: NF4381_low_49
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 1573575 - 1573839
Alignment:
| Q |
18 |
ataacatgctgaaattacatcaatttgccaaagctgaaatgcattgcaaaatgttggatagagcaattcataaaatcttgtacacannnnnnn-cttcag |
116 |
Q |
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| T |
1573575 |
ataacatactgaaattacatcaatttgccaaagctgaaatgcattgcaaaatgtttgatagagcaattcataaaaccttgtacacaatttttttcttcag |
1573674 |
T |
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| Q |
117 |
acaattccaagaacagtgctttttgatcagaagactggaactaatttgcttcaatggccagtagaagaagtagaaagcttaagactgagtagtgatgaat |
216 |
Q |
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| T |
1573675 |
acaattccaagaacagtgctttttgatcagaagactggaactaatttgcttcaatggccagtagaagaagtagaaagcttaagactgagtagtgatgaat |
1573774 |
T |
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| Q |
217 |
atgcagaagtagttgttacacctggctctattgttccattgaacattactcaagcaacacaggtt |
281 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1573775 |
atgcagaagtagttgttacacctggctctgttgttccattgaacattactcaagcaacacaggtt |
1573839 |
T |
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