View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_50 (Length: 289)
Name: NF4381_low_50
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 43818143 - 43818401
Alignment:
| Q |
19 |
ttattactgtgaagtattttaattcttaggagaggtagtttttggtgtcccgccaatatgcggcacctgttatttgtttctcttttttcgtatttatctg |
118 |
Q |
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| T |
43818143 |
ttattactgtgaagtattttaattcttaggagaggtagtttttggtgtcccgccaatatgtggcacctgttatttgtttcgcttttttcgtatttatctg |
43818242 |
T |
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| Q |
119 |
cgaccggaacagctttttgtagaattcggcgtggataatattagctgatt------nnnnnnnnnggtttgttgtttatgtagggagcaacaaaactggg |
212 |
Q |
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| T |
43818243 |
cgaccggtacggctttttgtagaattcggcgtggataatattagctgattaaaaaaaaaaaaaaaggtttgttgtttatgtagggagcaacaaaactggg |
43818342 |
T |
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| Q |
213 |
gtaccagtaacttttgaacttccattgtcgcgttggtatgccttggaacatgttgctat |
271 |
Q |
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| T |
43818343 |
gtaccagtaacttttgaacttccattgtcgcgttggtatgccttggaacatgttgctat |
43818401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 19873430 - 19873568
Alignment:
| Q |
22 |
ttactgtgaagtattttaattcttaggagaggtag-tttttggtgtcccgccaatatgcggcacctgttatttgtttctcttttttcgtatttatctgcg |
120 |
Q |
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| T |
19873430 |
ttactgtgaagtattttaatccttgagaaaggtggttttttggtgctccgcctatatgcggtaccttttgtatgttccgctttattcgtttttatccgcg |
19873529 |
T |
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| Q |
121 |
accggaacagctttttgtagaattcggcgtggataatat |
159 |
Q |
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| T |
19873530 |
agcggtaccgcttcttgtacaactcgtcgtgaataatat |
19873568 |
T |
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