View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_51 (Length: 288)
Name: NF4381_low_51
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 41921175 - 41921447
Alignment:
| Q |
1 |
aaaactctggcattcaatgatttctaaatagtaaatgttatatggtacttctacttacctacatttgttatctttgttctcaaatatcaaataggattca |
100 |
Q |
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| T |
41921175 |
aaaactctggcattcaatgatttctaaatagtaaatgttatatggtacttctacttacctacatttgttatctttgttctcaaatatcaaataggattca |
41921274 |
T |
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| Q |
101 |
cttgttagaacttggcgttggaatgtatctcttctttatcggctgctacgatgtcatgtttgggaaaaaccacttcttcatctttctctttatccaagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921275 |
cttgttagaacttggcgttggaatgtatctcttctttatcggctgctacgatgtcatgtttgggaaaaaccacttcttcatctttctctttatccaagca |
41921374 |
T |
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| Q |
201 |
atcgccttcttcatcatggcatttggatatgtcggaaccttcgttcccaactgaagaaggacttggtgattct |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921375 |
atcgccttcttcatcatggcatttggatatgtcggaaccttcgttcccaactgaagaaggacttggtgattct |
41921447 |
T |
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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 26829412 - 26829252
Alignment:
| Q |
92 |
taggattcacttgttagaacttggcgttggaatgtatctcttctttatcggctgctacgatgtcatgtttgggaaaaaccacttcttcatctttctcttt |
191 |
Q |
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|||||||||| |||||||||||| |||||| | || ||| |||| |||||||| ||| | |||| ||||||||| ||||||||||| || || | |
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| T |
26829412 |
taggattcacatgttagaacttgttgttggattctacctcctcttatgtggctgctatgatcttatgtatgggaaaaatcacttcttcatattcctatac |
26829313 |
T |
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| Q |
192 |
atccaagcaatcgccttcttcatcatggcatttggatatgtcggaaccttcgttcccaact |
252 |
Q |
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|||||||| | || |||||||||||||||||||||||||| || || || |||||||||| |
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| T |
26829312 |
atccaagcgtttgctttcttcatcatggcatttggatatgttggcacttttgttcccaact |
26829252 |
T |
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