View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4381_low_56 (Length: 284)
Name: NF4381_low_56
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 25820811 - 25820554
Alignment:
| Q |
12 |
tcatcacgaagaataagaaaaatacataaatctagaattataaaagaagaacttacatgaataaggaaactgcaccaaaacttggtgaatgtttagaaac |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25820811 |
tcatcgcgaagaataagaaaaatacataaatctagaattataaaagaagaacttacattaataaggaaactgcaccaaaacttggtgaatgtttagaaac |
25820712 |
T |
|
| Q |
112 |
ttggaaaacaatgcaaaggaagaagtggaagacactttcagtgtctttagttgttttacagttttgaggtcaaaaagaaaatcccaccgtgctgctgcac |
211 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25820711 |
ttggaaaacaacgcaaaggaagaagtggaagactctttcagtgtctttagttgttttacggttttgaggtcaaaaagaaaatcccaccgagctgctgcac |
25820612 |
T |
|
| Q |
212 |
tagtcactgctaaatagatcagttcaagacagttagaaaaacagttagaagctgttat |
269 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25820611 |
tagtcactgctaaatagatcagtttaagacagttagaaaaacagttagaagctgttat |
25820554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 25815060 - 25814859
Alignment:
| Q |
19 |
gaagaataagaaaaatacataaatctagaattataaaagaagaacttacatgaataaggaaactgcaccaaaacttggtgaatgtttagaaacttggaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
25815060 |
gaagaataagaaaaatacataaatctagaattataatagaagaacttacatgaataaggaaactgcgccaaaatctggtgaaggtttagaaacttggaaa |
25814961 |
T |
|
| Q |
119 |
acaatgcaaaggaagaagtggaagacactttcagtgtctttagttgttttacagttttgaggtcaaaaagaaaatcccaccgtgctgctgcactagtcac |
218 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| ||| | |||||||| ||||||||| |||||||||| | |||| ||||||| ||||||||| |
|
|
| T |
25814960 |
gcaaggcaaaggaagaagtggaagactttttcagtgtgttttgctgttttacgattttgaggtaaaaaagaaaaactcaccaagctgctgaactagtcac |
25814861 |
T |
|
| Q |
219 |
tg |
220 |
Q |
| |
|
|| |
|
|
| T |
25814860 |
tg |
25814859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 25821024 - 25820929
Alignment:
| Q |
13 |
catcacgaagaataagaaaaatacataaatctagaattataaaagaagaacttacatgaataaggaaactgcaccaaaacttggtgaatgtttaga |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||| | ||| | ||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
25821024 |
catcaagaagaataagaaaaatacacaaaggtgaaatcaaaaaagaataacttacatgagcaaggaaacagcaccaaaacttggtgaaggtttaga |
25820929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 25815288 - 25815206
Alignment:
| Q |
23 |
aataagaaaaatacataaatctagaattataaaagaagaacttacatgaataaggaaactgcaccaaaacttggtgaatgttt |
105 |
Q |
| |
|
|||| |||||||| ||||| | |||| | |||| |||| |||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
25815288 |
aataggaaaaatagataaaggtggaatcaaaaaacaagagcttacatgaacaaggaaacagcaccaaaacttggtgaaggttt |
25815206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University