View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_58 (Length: 282)
Name: NF4381_low_58
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 27489230 - 27489090
Alignment:
| Q |
19 |
gctccacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttgttaacacctct |
118 |
Q |
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| T |
27489230 |
gctccacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttgttaacacctct |
27489131 |
T |
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| Q |
119 |
caacacatttatactattactccctccgttcctcatcacaa |
159 |
Q |
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| T |
27489130 |
caacacatttatactattactccctccgttcctcatcacaa |
27489090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 27485769 - 27485632
Alignment:
| Q |
19 |
gctccacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttgttaacacctct |
118 |
Q |
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| T |
27485769 |
gctccacactcacagagttaaggttgttttgagagctgttgcccctctgtgttgctgtggtagccgatgactcgtctcagtcaaatttataaacagctct |
27485670 |
T |
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| Q |
119 |
caacacatttatactattactccctccgttcctcatca |
156 |
Q |
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| T |
27485669 |
caacacatatatactattacttcctctgttcctcatca |
27485632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 27458134 - 27458055
Alignment:
| Q |
38 |
aaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttgttaacacctc |
117 |
Q |
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| T |
27458134 |
aaggtttttttgagagttgttgcctctctgtgttattatggtagccaatgattcgtctcggagaaattttttaacacctc |
27458055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 27456379 - 27456309
Alignment:
| Q |
23 |
cacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgt |
93 |
Q |
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| T |
27456379 |
cacacccagagagttaaggttgttttgagagttgtttcccctctttgttgtcgtggtagccgatgattcgt |
27456309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 27483265 - 27483182
Alignment:
| Q |
23 |
cacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaattt |
106 |
Q |
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| T |
27483265 |
cacagtcagagaaataaggttgttttgagagttgttgcctttccgtgttgctgtggttgccgatgatccgtctcagtgaaattt |
27483182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 27480320 - 27480234
Alignment:
| Q |
19 |
gctccacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttg |
107 |
Q |
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|||||||||||||||| ||||||||| ||||| | ||||||| ||||| |||| |||| |||||||||| | |||||||||| |||| |
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| T |
27480320 |
gctccacactcagaga--taaggttgtcttgagtgttgttgccgctctgagttgctgtgcaagccgatgatccttctcggtgaactttg |
27480234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 27489068 - 27489038
Alignment:
| Q |
193 |
taataaacaacaatggaaatggaatgaataa |
223 |
Q |
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| T |
27489068 |
taataaacaacaatggaaatggaatgaataa |
27489038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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