View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_59 (Length: 280)
Name: NF4381_low_59
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 34906597 - 34906752
Alignment:
| Q |
10 |
attattctgaccaaacatgcctggagttccaccggagctacttgcaccagctatttaatgcatcaaaataaaacaattaatttgaaacatcaatccttat |
109 |
Q |
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| T |
34906597 |
attattctgaccaaacatgcccggagttccaccggagctacttgcaccagctatttaatgcatcaaaataaaacaattaatttgaaacatcaatccttat |
34906696 |
T |
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| Q |
110 |
cattgcatgaaaac--nnnnnnnntagtgcaccaatacctaaattattgaactaac |
163 |
Q |
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| T |
34906697 |
cattgcatgaaaacaaaaaaaaaatagtgcaccaatagctaaattattgaactaac |
34906752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 34907503 - 34907610
Alignment:
| Q |
158 |
actaaccagattgtgtccgggcaaagttgctaaaggaaaaactgccacttgactgagcaggttgtgcagattggaatggcgttgacactgatggctgcag |
257 |
Q |
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| T |
34907503 |
actaaccaggttgtgtccgggcaaagttgctaaaggaaaaagtgccacttgactgagcaggttgtgcagattggaatggcgttgacactgatggctgcag |
34907602 |
T |
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| Q |
258 |
gtaaacaa |
265 |
Q |
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| T |
34907603 |
gtaaacaa |
34907610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 33 - 198
Target Start/End: Original strand, 34893814 - 34893981
Alignment:
| Q |
33 |
gagttccaccggagctacttgcaccagctatttaatgcatcaaaataaaacaattaatttgaaacatcaatcctt--atcattgcatgaaaacnnnnnnn |
130 |
Q |
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| T |
34893814 |
gagttccagcgaagctacttgcaccagctagataatacaacaaaataaaacaatcaatttgaaacattaatccttcaatcattgcatgaacaacaaaaaa |
34893913 |
T |
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| Q |
131 |
ntagtgcaccaatacctaaattattgaactaaccagattgtgtccgggcaaagttgctaaaggaaaaa |
198 |
Q |
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| T |
34893914 |
atagtgcacccatagctaaaatattgaactaaccaggttgtgtctgggcatagttgctaaaggaaaaa |
34893981 |
T |
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