View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_6 (Length: 670)

Name: NF4381_low_6
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_6
NF4381_low_6
[»] chr6 (12 HSPs)
chr6 (17-316)||(25322591-25322886)
chr6 (17-316)||(26152284-26152579)
chr6 (505-662)||(25324329-25324486)
chr6 (505-662)||(26154022-26154179)
chr6 (551-662)||(25322513-25322623)
chr6 (551-662)||(26152206-26152316)
chr6 (575-662)||(25989856-25989943)
chr6 (102-167)||(25989972-25990037)
chr6 (399-442)||(25322887-25322930)
chr6 (399-442)||(26152580-26152623)
chr6 (598-662)||(25434968-25435032)
chr6 (610-662)||(25442876-25442928)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 25322591 - 25322886
Alignment:
Q  17 cttgatatgtatgtaacaatgtgaatttgtataccattttcttcactcttatttcagtgtaaatttaagtgtgttatagtgttaattttttcatttcaat 116  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  25322591 cttgatatgtatataacaaagtgaatttgtataccgttttcttcactcttatttcagtgtaaatttcagtgtgttatagttgtaattttttcatttcaat 25322690  T
Q  117 tacattcaatctacaatgttgtacacttatcgccaaacatatagattatgtttgcaatctgaacatggattcaagcactggatactgaattattagcttt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25322691 tacattcaatctacaatgttgtacacttatcgccaaacatatagattatgtttgcaatctgaacatggattcaagcactggatactgaattattggcttt 25322790  T
Q  217 agaaaagaatggtacacgaacaccggttaatcttcttcctaagatcaaacttatatataggtagtaaatgggtatatgagatcaaatatcattcatatgg 316  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    |||||||||||||||||| ||||||||||||||||||||||||||    
T  25322791 agaaaagaatggtacacgaacaccggttaatcttcgtcctaagatcaaact----tataggtagtaaatgggtctatgagatcaaatatcattcatatgg 25322886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 26152284 - 26152579
Alignment:
Q  17 cttgatatgtatgtaacaatgtgaatttgtataccattttcttcactcttatttcagtgtaaatttaagtgtgttatagtgttaattttttcatttcaat 116  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  26152284 cttgatatgtatataacaaagtgaatttgtataccgttttcttcactcttatttcagtgtaaatttcagtgtgttatagttgtaattttttcatttcaat 26152383  T
Q  117 tacattcaatctacaatgttgtacacttatcgccaaacatatagattatgtttgcaatctgaacatggattcaagcactggatactgaattattagcttt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26152384 tacattcaatctacaatgttgtacacttatcgccaaacatatagattatgtttgcaatctgaacatggattcaagcactggatactgaattattggcttt 26152483  T
Q  217 agaaaagaatggtacacgaacaccggttaatcttcttcctaagatcaaacttatatataggtagtaaatgggtatatgagatcaaatatcattcatatgg 316  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    |||||||||||||||||| ||||||||||||||||||||||||||    
T  26152484 agaaaagaatggtacacgaacaccggttaatcttcgtcctaagatcaaact----tataggtagtaaatgggtctatgagatcaaatatcattcatatgg 26152579  T

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Target: chr6; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 505 - 662
Target Start/End: Original strand, 25324329 - 25324486
Alignment:
Q  505 ccgataaatgtacaacaatgtagattgaatgaaattgaagctaaaatatacaaagttcattttattatatacatttcaagctcctgcatctgcatcacga 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25324329 ccgataaatgtacaacaatgtagattgaatgaaattgaagctaaaatatacaaagttcattttattatatacatttcaagctcctgcatctgcatcacga 25324428  T
Q  605 tctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatg 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25324429 tctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatg 25324486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 505 - 662
Target Start/End: Original strand, 26154022 - 26154179
Alignment:
Q  505 ccgataaatgtacaacaatgtagattgaatgaaattgaagctaaaatatacaaagttcattttattatatacatttcaagctcctgcatctgcatcacga 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26154022 ccgataaatgtacaacaatgtagattgaatgaaattgaagctaaaatatacaaagttcattttattatatacatttcaagctcctgcatctgcatcacga 26154121  T
Q  605 tctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatg 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26154122 tctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatg 26154179  T

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Target: chr6; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 551 - 662
Target Start/End: Complemental strand, 25322623 - 25322513
Alignment:
Q  551 tatacaaagttcattttattatatacatttcaagctcctgcatctgcatcacgatctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaa 650  Q
    |||||||| |||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  25322623 tatacaaa-ttcactttgttatatacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctacatcttctatcactaaaggaaa 25322525  T
Q  651 atgttgatgatg 662  Q
    ||||||||||||    
T  25322524 atgttgatgatg 25322513  T

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Target: chr6; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 551 - 662
Target Start/End: Complemental strand, 26152316 - 26152206
Alignment:
Q  551 tatacaaagttcattttattatatacatttcaagctcctgcatctgcatcacgatctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaa 650  Q
    |||||||| |||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  26152316 tatacaaa-ttcactttgttatatacatatcaagctcctgcatcggcatcacgatctgtaaagaaagaaccactgctacatcttctatcactaaaggaaa 26152218  T
Q  651 atgttgatgatg 662  Q
    ||||||||||||    
T  26152217 atgttgatgatg 26152206  T

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Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 575 - 662
Target Start/End: Complemental strand, 25989943 - 25989856
Alignment:
Q  575 acatttcaagctcctgcatctgcatcacgatctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatg 662  Q
    |||| ||| ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  25989943 acatatcatgctcctgcatctgcatcacgatccgtaaagaaagaaccactcttacatcttctgtcactaaaagaaaatgttgatgatg 25989856  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 25989972 - 25990037
Alignment:
Q  102 ttttttcatttcaattacattcaatctacaatgttgtacacttatcgccaaacatatagattatgt 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  25989972 ttttttcatttcaattacattcaatctacaatgttgtacacttatcgccaaatatatacattatgt 25990037  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 442
Target Start/End: Original strand, 25322887 - 25322930
Alignment:
Q  399 tattatactagcttcaataaaatcaacatgtttatagcttcaat 442  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  25322887 tattataccagcttcaataaaatcaacatgtttatagcttcaat 25322930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 442
Target Start/End: Original strand, 26152580 - 26152623
Alignment:
Q  399 tattatactagcttcaataaaatcaacatgtttatagcttcaat 442  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  26152580 tattataccagcttcaataaaatcaacatgtttatagcttcaat 26152623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 662
Target Start/End: Complemental strand, 25435032 - 25434968
Alignment:
Q  598 atcacgatctgtaaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatg 662  Q
    |||||| ||||||||||||  |||||||||||||||||||   |||||| |||||| ||||||||    
T  25435032 atcacggtctgtaaagaaatcaccactgctacatcttctggtactaaaaaaaaatggtgatgatg 25434968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 610 - 662
Target Start/End: Complemental strand, 25442928 - 25442876
Alignment:
Q  610 aaagaaagaaccactgctacatcttctgtctctaaaagaaaatgttgatgatg 662  Q
    |||||||||| ||  |||||||||||||   ||||||||||||||||||||||    
T  25442928 aaagaaagaatcagcgctacatcttctggtactaaaagaaaatgttgatgatg 25442876  T

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