View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4381_low_63 (Length: 272)

Name: NF4381_low_63
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4381_low_63
NF4381_low_63
[»] chr2 (6 HSPs)
chr2 (1-272)||(7499057-7499328)
chr2 (8-272)||(7488924-7489188)
chr2 (85-126)||(7435474-7435515)
chr2 (85-126)||(7524303-7524344)
chr2 (185-253)||(7429322-7429390)
chr2 (12-122)||(7503527-7503637)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 7499057 - 7499328
Alignment:
Q  1 tgtatctgggcatgggtgttgtaataaagagttcattgctcacgtcaaatgacaccaaacttgtttcgaaaaggtgacaatcacttttataccaccaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7499057 tgtatctgggcatgggtgttgtaataaagagttcattgctcacgtcaaatgacaccaaacttgtttcgaaaaggtgacaatcacttttataccaccaatg 7499156  T
Q  101 acacattccatccatatagaatcggataatttcataagaattataagggatctccatcaaaggaaagtcaaaatcaaatttagtccaagagttgtttctg 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7499157 acacattccatccatatagaattggataatttcataagaattataagggatctccatcaaaggaaagtcaaaatcaaatttagtccaagagttgtttctg 7499256  T
Q  201 aaactatatatctcccattcaggttcatatgatatatcttgccatggcacatcatcaaatttcaaatcaagt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||||    
T  7499257 aaactatatatctcccattcaggttcatatgatatatcttgccatggcacatcaaaaaattacaaaccaagt 7499328  T

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Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 7488924 - 7489188
Alignment:
Q  8 gggcatgggtgttgtaataaagagttcattgctcacgtcaaatgacaccaaacttgtttcgaaaaggtgacaatcacttttataccaccaatgacacatt 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7488924 gggcatgggtgttttaataaagagttcattgctcacgtcaaatgacaccaaacttgtttcgaaaaggtgacaatcacttttataccaccaatgacacatt 7489023  T
Q  108 ccatccatatagaatcggataatttcataagaattataagggatctccatcaaaggaaagtcaaaatcaaatttagtccaagagttgtttctgaaactat 207  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7489024 ccatccatattgaatcggacaatttcataagaattataagggatctccatcaaaggaaagtcaaaatcaaatttagtccaagagttgtttctgaaactat 7489123  T
Q  208 atatctcccattcaggttcatatgatatatcttgccatggcacatcatcaaatttcaaatcaagt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||||    
T  7489124 atatctcccattcaggttcatatgatatatcttgccatggcacatcaagaaattccaaaccaagt 7489188  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 7435474 - 7435515
Alignment:
Q  85 ttttataccaccaatgacacattccatccatatagaatcgga 126  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  7435474 ttttatcccaccaatgacacattccatccatgtagaatcgga 7435515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 7524303 - 7524344
Alignment:
Q  85 ttttataccaccaatgacacattccatccatatagaatcgga 126  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  7524303 ttttatcccaccaatgacacattccatccatgtagaatcgga 7524344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 7429322 - 7429390
Alignment:
Q  185 ccaagagttgtttctgaaactatatatctcccattcaggttcatatgatatatcttgccatggcacatc 253  Q
    |||||||||| |||| | ||||||||||||||||   |||| ||||||||||| || ||||||||||||    
T  7429322 ccaagagttgcttcttagactatatatctcccatatgggttgatatgatatatatttccatggcacatc 7429390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 7503527 - 7503637
Alignment:
Q  12 atgggtgttgtaataaagagttcattgctcacgtcaaatgacaccaaacttgtttcgaaaaggtgacaatcacttttataccaccaatgacacattccat 111  Q
    ||||||||||||||||| | ||||||| ||| || ||||| |||||||| | ||| |||||||||    | ||||||||  |||||||||||  ||||||    
T  7503527 atgggtgttgtaataaatacttcattgttcaagtaaaatggcaccaaacatatttagaaaaggtgtacttaacttttatcgcaccaatgacattttccat 7503626  T
Q  112 ccatatagaat 122  Q
    | || ||||||    
T  7503627 caatgtagaat 7503637  T

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