View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_71 (Length: 246)
Name: NF4381_low_71
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5663096 - 5663334
Alignment:
| Q |
1 |
agcaagattgaattcattgtttacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacac |
100 |
Q |
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| T |
5663096 |
agcaagattgaattcattgtttatggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacac |
5663195 |
T |
|
| Q |
101 |
attagcttcacattctcctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggtttataacttcttcatctttatgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5663196 |
attagcttcacattctcctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggtttataacttcttcatctttctgtt |
5663295 |
T |
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| Q |
201 |
attatactactgttgttataatagttttcttctgtgctg |
239 |
Q |
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| T |
5663296 |
attatactactgttgttataatagttttcttctgtgctg |
5663334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 52131335 - 52131508
Alignment:
| Q |
1 |
agcaagattgaattcattgtttacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacac |
100 |
Q |
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| T |
52131335 |
agcaagattgaatttattattgacggtgtatctcaatccgatttcgaagcttctgtcatcggtaagaccatggtcgcttctcacaagaagtcaaaga-ac |
52131433 |
T |
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| Q |
101 |
at-tagcttcacattctcctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggttta |
179 |
Q |
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| T |
52131434 |
atgtagcgtcacgttatcctccatttcctgtcaattt-ggtactcacgaga----agttatgttctgctgccttggttta |
52131508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11649238 - 11649155
Alignment:
| Q |
1 |
agcaagattgaattcattgtttacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcac |
84 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11649238 |
agcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttctgtcatcggtaagaccatggtcgcttctcac |
11649155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 22007743 - 22007875
Alignment:
| Q |
4 |
aagattgaattcattgtttacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacat- |
102 |
Q |
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|||| ||||||||||||| |||||||||||||| ||||||| || ||||||||| || |||||||||||||||| ||||||||||||||||| |||| |
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| T |
22007743 |
aagactgaattcattgttggcggtgtatctcgcttcgacttcaaaacttctgtcatcgtcaagaccatggtcgcttttcacaagaagttaaaga-acatg |
22007841 |
T |
|
| Q |
103 |
tagcttcac----attctcctccatttcctgtca |
132 |
Q |
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| T |
22007842 |
tagcttcacgttgattctcctccatttcctgtca |
22007875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 11649159 - 11649122
Alignment:
| Q |
142 |
ctcacgagccagtagttatgttctgctgccttggttta |
179 |
Q |
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| T |
11649159 |
ctcacgagccagcagttatgttctgctgccttggttta |
11649122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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