View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_73 (Length: 244)
Name: NF4381_low_73
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 35084405 - 35084509
Alignment:
| Q |
19 |
ataacggcattttctactgccacaatttgctcgtgatttttaatgtctaaacatccatagtttacaagaaaaattgccacaatgcacaagaaaattgttg |
118 |
Q |
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| T |
35084405 |
ataacggcattttctactgccacaatttgctcgtgatttttaatgtctaaacatccatagtttacaagaaaaattgccacaatgcacaagaaaattgttg |
35084504 |
T |
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| Q |
119 |
tagtg |
123 |
Q |
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||||| |
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| T |
35084505 |
tagtg |
35084509 |
T |
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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 35084559 - 35084630
Alignment:
| Q |
173 |
gaacaaaactattaaactaataatcaagtgcaggttatagcacatgttgtcgcaactaataatgcattttcc |
244 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35084559 |
gaacaaaactattaaactaataatcaagtgcaggctatagcacatgttgtcgcaactaataatgcattttcc |
35084630 |
T |
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