View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_75 (Length: 239)
Name: NF4381_low_75
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_75 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11665910 - 11665710
Alignment:
| Q |
1 |
tttatatagtctaaaatcttccttaaacactcaaaattagagtatagagatcaaagaaacataacatcatttgctacccaaggatatttgctagcataag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11665910 |
tttatatagtctaaaatcttccttaaacactcaaaattagagtatagagatcaaagaaacataacatcatttgcta-----------------gcataag |
11665828 |
T |
|
| Q |
101 |
aggggatatcttggtttctacctataaagtcccatgttttcttcaccctcgtaatatggcacaaatcataggaagcagacttagccaaatttctaccttc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11665827 |
aggggatatcttggtttctacctataaagtaccatgttttcttcaccctcgtaatatggcacaaatcatagcaagcagacttagccaaatttctaccttc |
11665728 |
T |
|
| Q |
201 |
aagaattttacgccactt |
218 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
11665727 |
aaaaattttacgccactt |
11665710 |
T |
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