View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4381_low_83 (Length: 227)
Name: NF4381_low_83
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_83 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 54276859 - 54276658
Alignment:
| Q |
11 |
catcatcacaatgagaaagaaagagataagaaga---gaaaacaagtttggttaccagagtagttatgaggaagagggagagtagttccttcgagcaacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54276859 |
catcatcacaatgagaaagaaagagataagaagaagagaaaacaagtttggttaccagagtagttatgaggaagagggagagtagttccttcgagcaacc |
54276760 |
T |
|
| Q |
108 |
ttcctcgaaaatgcgattgctgtaatggtaaaccgtcttctccgacgacgccggtaggtttaggtttgaaatactgagagacttcagtgggaccatcgtg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54276759 |
ttcctcgaaaatgcgattgctgtaatggtaaaccgtcttctccgacgacgccggtaggtttaggtttgaaatactgagagacttcggtgggaccatcgtg |
54276660 |
T |
|
| Q |
208 |
ct |
209 |
Q |
| |
|
|| |
|
|
| T |
54276659 |
ct |
54276658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University