View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4381_low_84 (Length: 226)
Name: NF4381_low_84
Description: NF4381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4381_low_84 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 4202537 - 4202319
Alignment:
| Q |
9 |
tttttatattcattgtcacattagtattgtatacaaaaggaacactaatttgttccttaatggatttgctgcattcatgcaaccacgcggtttgagattt |
108 |
Q |
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| T |
4202537 |
tttttatatttgatgtcacattagtattgtatatgcagggaacattaatttgttccttaatgggttggctgcatttatgcaaccacgcgatttgagatt- |
4202439 |
T |
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| Q |
109 |
atatcgtctgatgttgatcgaacaattcatgttttagcttcgtgttttgaattt--gttttacaaaattagaatgcaaaagtctaattaaaatcaaatta |
206 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4202438 |
atattgtctgatgttgatctaacaattcatgttttagcttcgtgttttgaatttttgttttacaaaattagaatgcaaaagtctaattaaaatcaaatga |
4202339 |
T |
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| Q |
207 |
ataatatcgtatgactatgt |
226 |
Q |
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|||||||||||||||||||| |
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| T |
4202338 |
ataatatcgtatgactatgt |
4202319 |
T |
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