View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4382-Insertion-10 (Length: 855)
Name: NF4382-Insertion-10
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4382-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 202 - 785
Target Start/End: Complemental strand, 39316665 - 39316068
Alignment:
| Q |
202 |
tacgttgttatacaagtcattgtatgaatactattaaaataatgagattcacttcaccccacaaaatcactgaattttgtgtccctttcttttgtcaatc |
301 |
Q |
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| T |
39316665 |
tacgttgttatacaaatcattgtatgaatactattaaa-taatgagattcatttcaccccacaaaataactgaattttgtgtccctttcttttatcaatc |
39316567 |
T |
|
| Q |
302 |
ttaaatattttgagattacctagtataaaaattttgtttaannnnnnnnnnagaaaataaggtttttt-gaaaaa-taaacaatttaagggcatatgcac |
399 |
Q |
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| T |
39316566 |
ttaaatattttgagattacctagtataaaaattttgtttaattttttttttagaaaataagttttttttgaaaaactaaacaatttaagggcatatgcac |
39316467 |
T |
|
| Q |
400 |
caacttttgt--------------ccttagagacttatttgagtgggaagctcgggctcaatagctgtagaagcctttgattannnnnnnnnnncctaca |
485 |
Q |
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| T |
39316466 |
caacttttgtttttgggcttttgtccttagagacttatttgagtgg-aagctcgggctcaatggctttagaagcctttgatt-----tttttttcctaca |
39316373 |
T |
|
| Q |
486 |
aacatgtgcatttggaaaagttttgtaggaaattgacaactctaattataagtgtaacttttttatgcaatgtatgtnnnnnnnnnctttacattgtaaa |
585 |
Q |
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| T |
39316372 |
aacatgtgcatttggaaaagttttgtaggaaattgacaactctaattataagtgtaacttttttatgcaatgtatgtaaaaaaaa-ctttacattgtaaa |
39316274 |
T |
|
| Q |
586 |
aaacatc----tatgtatgattttgtgaaacacgggttagatgagatgatcagattg--tgtgtcacctaaacctataaacacttttaaggaggtttatc |
679 |
Q |
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| T |
39316273 |
aaacatcaaaatatgtatgattttgtgaaatacgggttagatgagatgattggattgagtgtgtcacctaaacctataaacacttttaaggaggtttatc |
39316174 |
T |
|
| Q |
680 |
tatacataaatgttgcgtacaacgaacgtttattcatgattggtttttgaatgatgtggcaaattatcaccccttaaatttcatacttatttgaccatgg |
779 |
Q |
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| T |
39316173 |
tatacataaatgttgtgtacaacgaacgtttattcacgattggttttcgaatgatgtggtaaattatcatcccttagatttcatacttatttgaccaccg |
39316074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 39318205 - 39318043
Alignment:
| Q |
45 |
aatgtttataagctgaacattgtttgtcacaaggttcagttcaatggagtgattattaacatatatcagagtttgacatatggttagttacatataagtt |
144 |
Q |
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| T |
39318205 |
aatgtttataagctgaacattgtttgtcacaaggttcagttcaatggagtgattattaagatatatcagagtttgacatatggttagttacatataagtt |
39318106 |
T |
|
| Q |
145 |
agttttagaggttacttgttttacaagtaaaccaaatagtcgaactttttattctaatacgtt |
207 |
Q |
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| T |
39318105 |
agttttagaggttacttgttttacaagtaaaccaaatagtcgaactttttattctactacgtt |
39318043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 648 - 785
Target Start/End: Complemental strand, 39315915 - 39315779
Alignment:
| Q |
648 |
taaacctataaacacttttaaggaggtttatctatacataaatgttgcgtacaacgaacgtttattcatgattggtttttgaatgatgtggcaaattatc |
747 |
Q |
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| T |
39315915 |
taaacctataaacacttccaaggaagtttatctatacagaaatgatgtgtacaccgaatgtttatttacgattggtttctgaatgatgtggcaaattatc |
39315816 |
T |
|
| Q |
748 |
accccttaaatttcatacttatttgaccatggcttcat |
785 |
Q |
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| T |
39315815 |
a-acctttggtttcatacttatttgaccaccgcttcat |
39315779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 797 - 855
Target Start/End: Complemental strand, 39316049 - 39315991
Alignment:
| Q |
797 |
ataagaccctccacctccgtgatttccgaccaaacaataattttatttgctaagattca |
855 |
Q |
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| T |
39316049 |
ataagacccaccatctctgtaatttccgaccaaacaataattttatatgctaagattca |
39315991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 2610789 - 2610736
Alignment:
| Q |
121 |
catatggttagttacatataagttagttttagaggttacttgttttacaagtaa |
174 |
Q |
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| T |
2610789 |
catatggttagttggttagaagttagttttagaggttacttgttttccaagtaa |
2610736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 785
Target Start/End: Complemental strand, 25051067 - 25050984
Alignment:
| Q |
702 |
cgaacgtttattcatgattggtttttgaatgatgtggcaaattatcaccccttaaatttcatacttatttgaccatggcttcat |
785 |
Q |
| |
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|||||||| |||| ||||||||| |||| |||||||||||||| | |||||| |||||| |||||||||||| ||||||| |
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| T |
25051067 |
cgaacgttatttcacgattggtttccgaattatgtggcaaattattatcccttagatttcacgcttatttgaccaccgcttcat |
25050984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 773
Target Start/End: Original strand, 26032198 - 26032252
Alignment:
| Q |
719 |
ttggtttttgaatgatgtggcaaattatcaccccttaaatttcatacttatttga |
773 |
Q |
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|||||| | ||||||||||||||||||| | |||||| |||||||| |||||||| |
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| T |
26032198 |
ttggttctagaatgatgtggcaaattattatcccttagatttcataattatttga |
26032252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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