View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4382-Insertion-12 (Length: 801)
Name: NF4382-Insertion-12
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4382-Insertion-12 |
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Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 202 - 798
Target Start/End: Original strand, 7070381 - 7070980
Alignment:
| Q |
202 |
gtacaaggtgatcccaattatccaaactaccaccatcttttagacatgttgaaatggccaccatgccctgattaatcattgcgtatttattgtgctcagc |
301 |
Q |
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| T |
7070381 |
gtacaaggtgatcccaattatccaaactaccaccat-ttttagacatgttgaaatggccaccatgccctgattaatcattgcgtatttattgtgctcagc |
7070479 |
T |
|
| Q |
302 |
ccctttagttggtaaggtcatttaggtcatatgagctgctataaattcactaattagctagttaacttaattaaagtaagattaggaaagataacttact |
401 |
Q |
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| T |
7070480 |
ccctttagttggtaaggtcatttaggtcatatgagctgctataaattcactaattagctagttaacttaattaaagtaagattaggaaagataacttact |
7070579 |
T |
|
| Q |
402 |
ttttagaaataaagagtgctgcacgaagttgattgaaggcacgtacgaggttatttggatgagcaaaacaaacaagttatg-ttgtgtgggagaaatagg |
500 |
Q |
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| T |
7070580 |
ttttagaaataaagagtgctgcacgaagttgatcgatggcacgtacgaggttatttggatgagcaaaacaaacaagttatgtttgtgtgggagaaatagg |
7070679 |
T |
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| Q |
501 |
gatttggtttctgtgaagacact---tagtcagttaggcacatccgaacctttcaaacttgttggataatccaaaattttaagttagaatttaagannnn |
597 |
Q |
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| T |
7070680 |
gatttggtttctgtgaagacactaagtagtcagttaggcacatccgaacctttcaaacttgttggataatccaaaattttaagttagaatttaagatttt |
7070779 |
T |
|
| Q |
598 |
nnnnnnnggtggaaagaatttaagatttatgaattacttaaatatgaacttaaaatctaaaccgttcaattataatcaagcaatttaaatgtgttgagtg |
697 |
Q |
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| T |
7070780 |
tttttttggtggaaagaatttaagatttatgaattacttaaatatgaacttaaaatttaaaccgttcaattaaaatcaagcaatttaaatgtgttgagtg |
7070879 |
T |
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| Q |
698 |
ttgaccgcatgtcgtcagactatactaaatcttcttcgtaactttaacttagttggtacagacaatacataatatatgaaagatgaggggttcaaacatc |
797 |
Q |
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| T |
7070880 |
ttaactgcatgtcgtcagactatactaaatcttctgcgtgactttaacttagttgatacagacaatgcataatatatgtaaggtgcgtggttcaaaaatc |
7070979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 7070186 - 7070348
Alignment:
| Q |
7 |
aactatatactcataaacgtccaaatcctttaccacttagacaaattcattttttggtaacttgattatatgtgtgggtgttaggatattggcacaatat |
106 |
Q |
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| T |
7070186 |
aactatatactcaaaaacgtccaaatcctttaccacttagacaaattcatttgttggtaacttgaatatatgtatgggtgttaggatattggcacaatat |
7070285 |
T |
|
| Q |
107 |
gtcatccctttttggcttttatgtgatttgaatacgtcctttggaaaccaacgcaaactaccg |
169 |
Q |
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| T |
7070286 |
gtcatccctttttggcttttatgcgatttaaatacgtcctttggaaaccaacgcaaactaccg |
7070348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 742 - 800
Target Start/End: Original strand, 3389169 - 3389227
Alignment:
| Q |
742 |
taacttagttggtacagacaatacataatatatgaaagatgaggggttcaaacatcggc |
800 |
Q |
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| T |
3389169 |
taactcagttggtatggacaatgcataatatatgcaagatctggggttcaaacatcggc |
3389227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 740 - 794
Target Start/End: Complemental strand, 32862138 - 32862084
Alignment:
| Q |
740 |
tttaacttagttggtacagacaatacataatatatgaaagatgaggggttcaaac |
794 |
Q |
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| T |
32862138 |
tttaacttagttggtatagacaatacataatatatgcaagatctggcgttcaaac |
32862084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 781
Target Start/End: Complemental strand, 10029881 - 10029840
Alignment:
| Q |
740 |
tttaacttagttggtacagacaatacataatatatgaaagat |
781 |
Q |
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| T |
10029881 |
tttaacttaattggtaaagacaatacataatatatgcaagat |
10029840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 777
Target Start/End: Complemental strand, 24872983 - 24872936
Alignment:
| Q |
730 |
tcttcgtaactttaacttagttggtacagacaatacataatatatgaa |
777 |
Q |
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| T |
24872983 |
tcttcgtaaacttaacttagttgatacagacattacataatatatgaa |
24872936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 733 - 775
Target Start/End: Complemental strand, 1864282 - 1864240
Alignment:
| Q |
733 |
tcgtaactttaacttagttggtacagacaatacataatatatg |
775 |
Q |
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| T |
1864282 |
tcgtaagtttaacttagttggtagagacaatgcataatatatg |
1864240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 741 - 775
Target Start/End: Original strand, 29506833 - 29506867
Alignment:
| Q |
741 |
ttaacttagttggtacagacaatacataatatatg |
775 |
Q |
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| T |
29506833 |
ttaacttagttggtatagacaatacataatatatg |
29506867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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