View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4382-Insertion-13 (Length: 588)
Name: NF4382-Insertion-13
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4382-Insertion-13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 8 - 588
Target Start/End: Complemental strand, 39231755 - 39231176
Alignment:
| Q |
8 |
actaagacatttatgagaaatttaaatggaagagaaggagcaactaattaaatgcatgtttgaattgtcttttgcatagtcacgtcgagccactgtgatt |
107 |
Q |
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| T |
39231755 |
actaagacatttatgagaaatttaaatggaagagaaggagcaactaattaa-tgcatgtttgaattgtcttttgtatagtcacgtcgagccaccgtgatt |
39231657 |
T |
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| Q |
108 |
ttgataaaaactacattttggaccttcacaaaatcatggtgtcattgcgatttctatgatttcatagatgcattatgtggatgaagaagaccctttacaa |
207 |
Q |
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| T |
39231656 |
ttgataaaaactacattttggacctcgacaaaatcatggtgtcatcgcgatttctatgatttcatagatgcattaggtggatgaagaagaccctttacaa |
39231557 |
T |
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| Q |
208 |
tactgaacactgctctcattcatcctttccaaaacataatgccccatactctcacttgcttccaacaaattctctttacacaaaaactcattcccacaaa |
307 |
Q |
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| T |
39231556 |
tactgaacactgctctcattcatcctttccaaaacataatgccccatactctcacttgcttccaacaaattctctttacacaaaaactcattcccacaaa |
39231457 |
T |
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| Q |
308 |
cttgttcaacttcaccagaaaaatcatgcaaaaacacatgagtctttgggttaccacctttcttacttctagccaacaccccggctgtaaatatcgccga |
407 |
Q |
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| T |
39231456 |
cttgttcaacttcaccagaaaaatcatgcaaaaacacatgagtctttgggttaccacctttcttacttctagccaacaccccggcggtaaatatcgccga |
39231357 |
T |
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| Q |
408 |
cattctcccgggagcttccggccaatccccacgaggcccgtcaaccaatattacatcccaatcaacttcatacacatggtttggaagatcattaattcca |
507 |
Q |
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| T |
39231356 |
cattctcccgggagcttccggccaatccccacgaggcccgtcaaccaatattacatcccaatcaacttcatacacatggtttggaagatcattaattcca |
39231257 |
T |
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| Q |
508 |
agtttgcaatccgagaataaaagattctgcactggcttgcactcatttgctacatgttctttagctgaagctataagctct |
588 |
Q |
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| T |
39231256 |
agtttgcaatccgagaataaaagattctgcactggcttgcactcatttgctacatgttctttagctgaagctataagctct |
39231176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 33371810 - 33371872
Alignment:
| Q |
366 |
tttcttacttctagccaacaccccggctgtaaatatcgccgacattctcccgggagcttccgg |
428 |
Q |
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| T |
33371810 |
tttcttgctcctagccaacactgctgctgtaaagatcgccgacattctccccggagctgccgg |
33371872 |
T |
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