View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4382-Insertion-14 (Length: 557)
Name: NF4382-Insertion-14
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4382-Insertion-14 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Complemental strand, 29602198 - 29601649
Alignment:
| Q |
8 |
ccatggctatggtcccttgattaggatatgaggaatcaccaaaaggagttctagcgttctttccctccattaaagtaatgtaatagacaattccaaatac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29602198 |
ccatggctatggtcccttgattaggatatgaggaatcaccaaaaggagttctagcgttctttccctccattaaagtaatgtaatagacaattccaaatac |
29602099 |
T |
|
| Q |
108 |
aacacttgcaagagataaaattgcaccaccagcaaacactccaggtttgacaacgtaacagtagtaggtgccgaagtatacactctcttcaccgcgctga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29602098 |
aacacttgcaagagataaaattgcaccaccagcaaacactccaggtttgacaacataacagtagtaggtgccgaagtatacactctcttcaccgcgctga |
29601999 |
T |
|
| Q |
208 |
tcgttcagggcagcaccggttagcaacaggagaaatgcgattacatatgtgaacctatttgaatagagattacatgcaaacctcgtcagtatagattttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
29601998 |
tcgttcagggcagcaccggttagcaacaggagaaatgcgattacatatgtgaacctatttgaatagagattacatgtaaacctcatcagtatagattttt |
29601899 |
T |
|
| Q |
308 |
aataaaatgaccaagactgtaacatgaacattgttatgcttctagttgctgcaaccaaaagcaaatgtacatataataatcaaagaataaaagctattat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29601898 |
aataaaatgaccaagactgtaacatgaacattgttatgcttctagttgctgcaaccaaaagcaaatgtacatataataatcaaagaataaaagctattat |
29601799 |
T |
|
| Q |
408 |
acttcactagataatctgattgactctaccagcttagtcaaataggaggactataacaaacaaaaggtacaaagtgaaaattaccaggataaaacaaagc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29601798 |
acttcactagataatctgattgactctaccagcttagtcaaataggaggactataacaaataaaaggtacaaagtgaaaattaccaggataaaacaaagc |
29601699 |
T |
|
| Q |
508 |
gggccagtgccaccgtccaattggaatcagggatccgtgaactttttctg |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29601698 |
aggccagtgccaccgtccaattggaatcagggatccgtgaactttttctg |
29601649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 26260506 - 26260605
Alignment:
| Q |
304 |
ttttaataaaatgaccaagactgtaacatgaacattgttatgcttctagttgctgcaaccaaaagcaaatgtacatataataatcaaagaataaaagcta |
403 |
Q |
| |
|
||||||||||||||| || ||||||| |||||||||||| | ||||||| ||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
26260506 |
ttttaataaaatgactaaagttgtaacaa-aacattgttatgtctatagttgcagcaaccaaaagcatatgtacat---atgatcaaagaataaaagcta |
26260601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 487
Target Start/End: Original strand, 26260630 - 26260705
Alignment:
| Q |
409 |
cttcactagataatctgattgactctaccagcttagtcaaataggaggactataacaaacaaaaggtacaaagtgaaaa |
487 |
Q |
| |
|
|||||||||| ||||| |||||| ||| ||| ||||||||||||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
26260630 |
cttcactagacaatctatttgactatacaagcatagtcaaatagga---ctataacaaacaaaaagtacatagtgaaaa |
26260705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University