View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4382-Insertion-16 (Length: 426)

Name: NF4382-Insertion-16
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4382-Insertion-16
NF4382-Insertion-16
[»] chr8 (8 HSPs)
chr8 (40-336)||(31877211-31877503)
chr8 (7-259)||(31561156-31561409)
chr8 (196-338)||(31547742-31547884)
chr8 (40-340)||(31559304-31559594)
chr8 (264-340)||(31544656-31544732)
chr8 (223-338)||(31556471-31556586)
chr8 (49-127)||(31556306-31556384)
chr8 (345-409)||(31877117-31877181)
[»] chr7 (2 HSPs)
chr7 (262-340)||(30034433-30034511)
chr7 (264-337)||(45868101-45868174)
[»] chr1 (2 HSPs)
chr1 (255-337)||(38624993-38625075)
chr1 (263-338)||(46613935-46614010)
[»] chr5 (3 HSPs)
chr5 (263-340)||(32361824-32361901)
chr5 (263-340)||(32379055-32379132)
chr5 (261-337)||(40640266-40640342)
[»] chr4 (3 HSPs)
chr4 (263-339)||(38507765-38507841)
chr4 (264-340)||(55290062-55290138)
chr4 (261-336)||(30161974-30162049)
[»] chr2 (6 HSPs)
chr2 (264-348)||(6493518-6493602)
chr2 (264-340)||(8328450-8328526)
chr2 (262-336)||(18229430-18229504)
chr2 (264-336)||(9596926-9596998)
chr2 (264-336)||(33994623-33994695)
chr2 (264-336)||(21281552-21281623)
[»] chr3 (2 HSPs)
chr3 (264-336)||(32053543-32053615)
chr3 (261-336)||(50683112-50683187)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 40 - 336
Target Start/End: Complemental strand, 31877503 - 31877211
Alignment:
Q  40 tttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaaga 139  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  31877503 tttgtggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcacg----gatatatgttgttattccaacagttaaga 31877408  T
Q  140 gcttctgtatgaaaaactctgaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaaaattcacgaaagcaattaa 239  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| ||||     
T  31877407 gcttctgtatgaaaaactctcaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaagtctcacaaaagccattac 31877308  T
Q  240 taagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 336  Q
    ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31877307 taaacagcaccaaactatcatcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 31877211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 31561156 - 31561409
Alignment:
Q  7 atgtacaacttgaacaatcacatat-ctctagactttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcac 105  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31561156 atgtacaacttgaacaatcacatattctctagactttgcggattcatccaccttggcttggaggatgtaatcggtctcaaggtgaatttgatcaattcac 31561255  T
Q  106 tcactgatatatgttgttattccaacagttaagagcttctgtatgaaaaactctgaccatatttttcatatgcttccccatcatttcaatctagaaaatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31561256 tcactgatatatgttgttattccaacagttaagagcttctgtatgaaaaactctcaccatatttttcatatgcttccccatcatttcaatctagaaaatt 31561355  T
Q  206 gtaaaagtattctaaaattcacgaaagcaattaataagcagcacaaaactatca 259  Q
    |||||||||||||||   |||| ||||| |||| ||| |||||| |||||||||    
T  31561356 gtaaaagtattctaattctcacaaaagccattactaaacagcaccaaactatca 31561409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 196 - 338
Target Start/End: Original strand, 31547742 - 31547884
Alignment:
Q  196 ctagaaaattgtaaaagtattctaaaattcacgaaagcaattaataagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagac 295  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31547742 ctagaaaattgtaaaagtattctaaaattcacaaaagcaattagtaagcagcacgaaactatcaccaagcggggatagctcagttgggagagcgtcagac 31547841  T
Q  296 tgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 338  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31547842 tgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 31547884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 40 - 340
Target Start/End: Original strand, 31559304 - 31559594
Alignment:
Q  40 tttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaaga 139  Q
    |||| |||||||||||||||||||| |||||||||||  |||||||||| |||||||||| ||||||    |||||||||||||||||||||||||||||    
T  31559304 tttgtggattcatccaccttggcttagaggatgtaattggtctcaaggttaatttgatcagttcact----gatatatgttgttattccaacagttaaga 31559399  T
Q  140 gcttctgtatgaaaaactctgaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaaaattcacgaaagcaattaa 239  Q
    ||||||  | |  |||||||||||  |||| ||||||| | |||||||||||| | |||| |||      || |||||||   |||| |||||||||||     
T  31559400 gcttctacaagcgaaactctgacctgatttctcatatggtcccccatcatttccaactaggaaa------aattattctagttttcaggaaagcaattac 31559493  T
Q  240 taagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 339  Q
     |||||||||  ||  |||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559494 gaagcagcactgaataatcgttatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 31559593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 31544656 - 31544732
Alignment:
Q  264 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544656 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 31544732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 223 - 338
Target Start/End: Original strand, 31556471 - 31556586
Alignment:
Q  223 ttcacgaaagcaattaataagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgat 322  Q
    |||||||| |||||||  || |||||||||   |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  31556471 ttcacgaatgcaattacaaatcagcacaaagtaatcatcatgcggggatagctcagttgggagagcgtcagattgaagatctgaaggtcgcgtgtttgat 31556570  T
Q  323 ccacgctcaccgcatt 338  Q
    ||||||||||||||||    
T  31556571 ccacgctcaccgcatt 31556586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 31556306 - 31556384
Alignment:
Q  49 tcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattc 127  Q
    |||||||| |||||||||||||||||||  ||||||| || ||||||||||| || || ||||||||||| ||| ||||    
T  31556306 tcatccactttggcttggaggatgtaattggtctcaatgttaatttgatcaagtcgctgactgatatatgatgtaattc 31556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 31877181 - 31877117
Alignment:
Q  345 tttttaattaaaaaacctgtatatatggaataataattgcttatgcattgccaataaatttggtt 409  Q
    |||||||||| |||| |||||||||||| ||||||||| | ||||||||| |  |||||||||||    
T  31877181 tttttaattataaaagctgtatatatggtataataattacatatgcattgactttaaatttggtt 31877117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 30034511 - 30034433
Alignment:
Q  262 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034511 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 30034433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 45868174 - 45868101
Alignment:
Q  264 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868174 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 45868101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 38625075 - 38624993
Alignment:
Q  255 tatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 337  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625075 tatcaacaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 38624993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 263 - 338
Target Start/End: Original strand, 46613935 - 46614010
Alignment:
Q  263 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46613935 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 46614010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 32361901 - 32361824
Alignment:
Q  263 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361901 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 32361824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 32379132 - 32379055
Alignment:
Q  263 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379132 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 32379055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 40640342 - 40640266
Alignment:
Q  261 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640342 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 40640266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 38507841 - 38507765
Alignment:
Q  263 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507841 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 38507765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 55290138 - 55290062
Alignment:
Q  264 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290138 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 55290062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 30161974 - 30162049
Alignment:
Q  261 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161974 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 30162049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 348
Target Start/End: Original strand, 6493518 - 6493602
Alignment:
Q  264 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattttactatttt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  6493518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttaacaatttt 6493602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 8328526 - 8328450
Alignment:
Q  264 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328526 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 8328450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 18229430 - 18229504
Alignment:
Q  262 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229430 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 18229504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 9596926 - 9596998
Alignment:
Q  264 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596926 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 9596998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 33994695 - 33994623
Alignment:
Q  264 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994695 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 33994623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 21281623 - 21281552
Alignment:
Q  264 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 336  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| ||||||||||    
T  21281623 gcggggatagctcagttgggagagcctcaga-tgaagatccgaaggtcgcgtgtttgatccatgctcaccgca 21281552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 32053615 - 32053543
Alignment:
Q  264 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053615 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 32053543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 50683187 - 50683112
Alignment:
Q  261 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 336  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50683187 caagctgggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 50683112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University