View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4382-Insertion-18 (Length: 214)

Name: NF4382-Insertion-18
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4382-Insertion-18
NF4382-Insertion-18
[»] chr3 (3 HSPs)
chr3 (10-181)||(44951409-44951592)
chr3 (10-65)||(45069836-45069891)
chr3 (175-214)||(45073282-45073321)
[»] chr4 (1 HSPs)
chr4 (85-166)||(20542137-20542218)
[»] chr2 (1 HSPs)
chr2 (85-126)||(8979481-8979522)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 44951409 - 44951592
Alignment:
Q  10 aacaaagcttgttttgattagtctgagagagagaaaaaa---ccttgttttgattataataaactactacaacatcgtcta----------accttctcc 96  Q
    |||||||||||||||||||||||||| ||| ||||||||   |||||||||||||||||||||||||||||||||||||||          |||||||||    
T  44951409 aacaaagcttgttttgattagtctgaaagaaagaaaaaaaaaccttgttttgattataataaactactacaacatcgtctacctttccctaaccttctcc 44951508  T
Q  97 tacctctgtacctagttcccatcaaagcacaaaccatcccttgacatcaattttcgtgtaaaaaattcatcccactacagtaata 181  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||||| ||||  |||||||    
T  44951509 tacctctgtgcctagttcccatcaaagcataaaccatcctttgacattaa-tttcgtgtaaaaaattcatcgcactgtagtaata 44951592  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 45069836 - 45069891
Alignment:
Q  10 aacaaagcttgttttgattagtctgagagagagaaaaaaccttgttttgattataa 65  Q
    |||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||    
T  45069836 aacaaagcttgttttgattagtctgaaagaaaaaaaaaaacttgttttgattataa 45069891  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 45073282 - 45073321
Alignment:
Q  175 agtaatatgcaacatatttaaatgttatactaaatttgag 214  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45073282 agtaatatgcaacatatttaaatgttatactaaatttgag 45073321  T

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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 20542218 - 20542137
Alignment:
Q  85 ctaaccttctcctacctctgtacctagttcccatcaaagcacaaaccatcccttgacatcaattttcgtgtaaaaaattcat 166  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||    
T  20542218 ctaatcttctcctacctctgtgcctagttcccatcaaagcacaaaccatccttcttcatcaattttcgtgtaaaaaattcat 20542137  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 8979522 - 8979481
Alignment:
Q  85 ctaaccttctcctacctctgtacctagttcccatcaaagcac 126  Q
    |||||||| |||||||||| | ||||||||||||||||||||    
T  8979522 ctaaccttgtcctacctctctgcctagttcccatcaaagcac 8979481  T

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