View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4382-Insertion-19 (Length: 129)
Name: NF4382-Insertion-19
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4382-Insertion-19 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 8e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 49426502 - 49426621
Alignment:
| Q |
10 |
gcattctttagaatatgttttgccaatagaagctcactttcttggcccaagaatttcaaaattgagcaagtttgaagttttaatgaaagacaatgaggaa |
109 |
Q |
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| T |
49426502 |
gcattctttagaatatgttttgccaatagaagctcactttcttggcccaagaatttcaaaattgagcaagtttgaagttttaatgaaagacaatgaggaa |
49426601 |
T |
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| Q |
110 |
cagatattgggtcctcccaa |
129 |
Q |
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| T |
49426602 |
cagatattgggtcctcccaa |
49426621 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 49432745 - 49432788
Alignment:
| Q |
12 |
attctttagaatatgttttgccaatagaagctcactttcttggc |
55 |
Q |
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| T |
49432745 |
attctttagaatatatcttgccaatagaagctcactttcttggc |
49432788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 49416055 - 49415963
Alignment:
| Q |
29 |
ttgccaatagaagctcactttcttggcccaagaatttcaaaattgagcaagtttgaagttttaatgaaagacaatgaggaacagatattgggt |
121 |
Q |
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| T |
49416055 |
ttgccaatagaagctcgccttcttcgcctaagaagttcagaagtttgcaagttttaagttgtaatgaaagactttgtggaacaaatattgggt |
49415963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 17641155 - 17641274
Alignment:
| Q |
10 |
gcattctttagaatatgttttgccaatagaagctcactttcttggcccaagaatttcaaaattgagcaagtttgaagttttaatgaaagacaatgaggaa |
109 |
Q |
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| T |
17641155 |
gcattcttcagaatgtttcttgccaatagaagctcgccttcttggcctatgaagtttagaactttgcaaattttaaggtgtaatgaaaaacattgcggaa |
17641254 |
T |
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| Q |
110 |
cagatattgggtcctcccaa |
129 |
Q |
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| T |
17641255 |
caaatattgggtccacccaa |
17641274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 1965629 - 1965543
Alignment:
| Q |
12 |
attctttagaatatgttttgccaatagaagctcactttcttggcccaagaatttcaaaattgagcaagtttgaagttttaatgaaag |
98 |
Q |
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| T |
1965629 |
attctttagaatatatcttgccaaaagaagctcactttcttggccaaagaaattaagaatttggcaagttttaagttgtaatgaaag |
1965543 |
T |
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