View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4382-Insertion-2 (Length: 1083)

Name: NF4382-Insertion-2
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4382-Insertion-2
NF4382-Insertion-2
[»] chr1 (9 HSPs)
chr1 (7-769)||(28019721-28020482)
chr1 (836-952)||(28020550-28020665)
chr1 (485-652)||(37960186-37960354)
chr1 (485-595)||(2066007-2066117)
chr1 (485-649)||(11915778-11915943)
chr1 (545-652)||(39476772-39476884)
chr1 (889-954)||(45581073-45581137)
chr1 (889-946)||(44596528-44596584)
chr1 (499-604)||(26607938-26608042)
[»] chr6 (8 HSPs)
chr6 (485-652)||(6059040-6059208)
chr6 (493-636)||(10587379-10587525)
chr6 (485-652)||(26198440-26198608)
chr6 (485-652)||(25329252-25329420)
chr6 (520-618)||(7791843-7791941)
chr6 (888-949)||(2156009-2156069)
chr6 (905-954)||(17441185-17441233)
chr6 (488-533)||(33024009-33024054)
[»] chr4 (3 HSPs)
chr4 (520-652)||(2186946-2187079)
chr4 (486-595)||(16572917-16573026)
chr4 (485-552)||(18460856-18460922)
[»] chr7 (9 HSPs)
chr7 (485-652)||(9895165-9895333)
chr7 (492-648)||(15125970-15126127)
chr7 (485-649)||(38652453-38652618)
chr7 (485-609)||(25255971-25256095)
chr7 (485-552)||(5643758-5643825)
chr7 (485-552)||(5649610-5649677)
chr7 (485-558)||(21304568-21304641)
chr7 (889-954)||(48634463-48634527)
chr7 (891-952)||(49001053-49001113)
[»] chr5 (3 HSPs)
chr5 (491-647)||(18892403-18892560)
chr5 (485-586)||(41404874-41404971)
chr5 (521-599)||(22626375-22626453)
[»] chr3 (7 HSPs)
chr3 (491-652)||(20452160-20452322)
chr3 (485-648)||(17263561-17263721)
chr3 (525-652)||(22908598-22908726)
chr3 (503-652)||(22735218-22735365)
chr3 (889-954)||(9505186-9505250)
chr3 (889-934)||(18074587-18074632)
chr3 (889-954)||(5418689-5418753)
[»] chr2 (1 HSPs)
chr2 (521-652)||(41578121-41578253)
[»] chr8 (3 HSPs)
chr8 (486-586)||(32027110-32027210)
chr8 (491-569)||(10831516-10831596)
chr8 (521-603)||(30698741-30698823)


Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 7 - 769
Target Start/End: Original strand, 28019721 - 28020482
Alignment:
Q  7 atggaagtgtctgtttccacaatgtggatgcatatttataagcagaaaaagttaaatctatttgggtaaaaagccagtaattttatggatcatgtgtgga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28019721 atggaagtgtctgtttccacaatgtggatgcatatttataagcagaaaaagttaaatctatttgggtaaaaagccagtaattttatggatcatgtgtgga 28019820  T
Q  107 ctgttacatttgtaacccatcaggtgtcagaagcatatatggaaaatggtatgggcctagattttggttgttatatattttaccatcctaggcactatat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28019821 ctgttacatttgtaacccatcaggtgtcagaagcatatatggaaaatggtatgggcctagattttggttgttatatattttaccatcctaggcactatat 28019920  T
Q  207 tttaaccataagtagaaatgaaaat-aatcgagttgatctaatctgaatttggttcgataaaaattgattcagttaaaaactcgaattgagtttgatacg 305  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||     
T  28019921 tttaaccataagtagaaatgaaaatgaatcgagttgatctaatctgaatttggttcgataaaaattgattcagttaaaaattcgatttgagtttgataca 28020020  T
Q  306 aatttttaactcaaatttggttaaagtttacgaataattcaattcaactcgtttactcgaatcacataatttaaaaattaaattatgttgtcaaaacacg 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28020021 aatttttaactcaaatttggttaaagtttacgaataattcaattcaactcgtttactcgaatcatataatttaaaaattaaattatgttgtcaaaacacg 28020120  T
Q  406 tcaaattttttagatctttgtactttttgcattnnnnnnnnngaagataaatattaaattaaaattaaag-nnnnnnnnnaacaaacaaaaatgatatat 504  Q
    |||||||||||||||||||||||||||||| ||          |||||||||||||||||||||||||||          ||||| ||||||||||||||    
T  28020121 tcaaattttttagatctttgtactttttgctttaaaaaaa---aagataaatattaaattaaaattaaagttttttttttaacaagcaaaaatgatatat 28020217  T
Q  505 attaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcagtcgatg 604  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28020218 attaacactgacaagcaatctcttcagcacaaggtgtaccaaagagaccatgaagaatttacaaaatcagcacctgaatacagctacaaatcagtcgatg 28020317  T
Q  605 ccaaaacatacaagttggctcgacaccacatatgagtcccaaaaacaatattaaattaagattaaagttatcacaaacataagtgcggaaaggatagata 704  Q
    || ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28020318 cccaaacatacaagctggctcgacaccacatatgagtcccaaaaataatagtaaattaaaattaaagttatcacaaacataagtgcggaaaggatagata 28020417  T
Q  705 caagtaaaagttaagacctacataaatacgtagataaatataaaaaatagccgactcaaacatcc 769  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28020418 caagtaaaagttaagacctacataaatacgtagataaatataaaaaatagccgactcaaacatcc 28020482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 836 - 952
Target Start/End: Original strand, 28020550 - 28020665
Alignment:
Q  836 gagttcacaatcataattcaagtcgactcatgaactaaacgagtcaaactagttcatttagttaaagaacttaattatcagttcaagttcaactcatttg 935  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||     
T  28020550 gagttcacaatcataattcaagtcgactcatgaactaaacgagtcaaattagctcatttagttagagaacttaattatcagttcaagttcaactcattt- 28020648  T
Q  936 ggttcatgaactaagtt 952  Q
    | |||||||||||||||    
T  28020649 gattcatgaactaagtt 28020665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 485 - 652
Target Start/End: Complemental strand, 37960354 - 37960186
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| ||||||||||||||||||||||||| | ||| |||||||| |||||||||||| |||||||| ||||| ||| |||||| ||||||||||||||    
T  37960354 aacaagcaaaaatgatatatattaacactgacacgcactctcttcaacataaggtgtactaaagagactacgaaaaatatacaaaatcagcacctgaata 37960255  T
Q  585 cagctacaaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaaaacaa 652  Q
    ||  ||||||| ||  |||  | ||||| |||||  || |||| |||||||||||||||||||||||||    
T  37960254 catatacaaataagctgatatccaaacaaacaagcgggttcgaccaccacatatgagtcccaaaaacaa 37960186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 485 - 595
Target Start/End: Complemental strand, 2066117 - 2066007
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| ||||||||||||||||||||||| | | |||||||||| |  | ||||||||| ||||||||||| |||||| |||||| ||||||||||||||    
T  2066117 aacaagcaaaaatgatatatattaacactaacatgcaatctcttgattacaaggtgtactaaagagaccacaaagaatatacaaaatcagcacctgaata 2066018  T
Q  585 cagctacaaat 595  Q
    ||| |||||||    
T  2066017 cagatacaaat 2066007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 485 - 649
Target Start/End: Original strand, 11915778 - 11915943
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||  ||| ||||| ||||||  ||||||||||||||||| ||||||| ||||| ||||    
T  11915778 aacaagcaaaaatgatatatattaacactgacaagcaatctctttggcacaaggtataccaa--agaccacgaagaatttataaagtcaacaccttaata 11915875  T
Q  585 cagct--acaaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaaaa 649  Q
    ||| |  | ||||||   |||||  |||| |||| |  ||||||| ||||||||||||||||||||||    
T  11915876 cagataaataaatcaactgatgctcaaacttacaggggggctcgaccaccacatatgagtcccaaaaa 11915943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 545 - 652
Target Start/End: Original strand, 39476772 - 39476884
Alignment:
Q  545 aaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcagtcgatgcc----aaaacatacaagttggctcga-caccacatatga 639  Q
    ||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||     ||||| |||||  ||||||| ||||||||||||    
T  39476772 aaagagatcacaaagaatatacaaagtcagcacctgaatacagatacaaatcagtcgatacccaaacaaacaaacaagcgggctcgaccaccacatatga 39476871  T
Q  640 gtcccaaaaacaa 652  Q
    |||||||||||||    
T  39476872 gtcccaaaaacaa 39476884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 889 - 954
Target Start/End: Complemental strand, 45581137 - 45581073
Alignment:
Q  889 tcatttagttaaagaacttaattatcagttcaagttcaactcatttgggttcatgaactaagttca 954  Q
    |||||||||||| |||||||||| || | ||||||||||||||||| ||||||||||| |||||||    
T  45581137 tcatttagttaatgaacttaattttccgctcaagttcaactcattt-ggttcatgaaccaagttca 45581073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 889 - 946
Target Start/End: Original strand, 44596528 - 44596584
Alignment:
Q  889 tcatttagttaaagaacttaattatcagttcaagttcaactcatttgggttcatgaac 946  Q
    ||||||| |||| |||||||||| |||||||||||||| ||||||| |||||||||||    
T  44596528 tcatttatttaacgaacttaattttcagttcaagttcagctcattt-ggttcatgaac 44596584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 499 - 604
Target Start/End: Complemental strand, 26608042 - 26607938
Alignment:
Q  499 atatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcag 598  Q
    ||||||||||||| ||| || |||||||||||||||||| ||||  ||| | ||||| |||||| || ||| ||| ||  ||||||||  ||||||| ||    
T  26608042 atatatattaacattgacaaacaatctcttcagcataagatgta-taaaaataccacaaagaatgtataaaatcaacaattgaatacacatacaaattag 26607944  T
Q  599 tcgatg 604  Q
    ||||||    
T  26607943 tcgatg 26607938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 6e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 485 - 652
Target Start/End: Complemental strand, 6059208 - 6059040
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| |||||||||||||||||| |||||| ||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  6059208 aacaagcaaaaatgatatatattagcactgataagaaatctcttcagtacaaggtgtaccaaagagatcacgaagaatttacaaagtcagtacctgaata 6059109  T
Q  585 cagctacaaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaaaacaa 652  Q
    ||  |||||||||| ||||||||||| | |||||  | ||| | ||||||||| ||||||||| |||||    
T  6059108 caaatacaaatcagccgatgccaaaataaacaagcggactcaaccaccacatacgagtcccaataacaa 6059040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 493 - 636
Target Start/End: Complemental strand, 10587525 - 10587379
Alignment:
Q  493 aaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacga--agaatttacaaagtcagcacctgaatacagcta 590  Q
    ||||||||||||||||||| ||| |||||| |||||||||| ||||||||||||||||| |||||  ||||||||||||||| ||||||| ||| || ||    
T  10587525 aaaatgatatatattaacattgacaagcaacctcttcagcacaaggtgtaccaaagagatcacgaagagaatttacaaagtcggcacctggatatagata 10587426  T
Q  591 caaatcagtcgatgccaaaacatacaagttggctcga-caccacata 636  Q
    ||||||||  |||||| |||||||||||| ||||||| |||||||||    
T  10587425 caaatcagctgatgcccaaacatacaagtgggctcgaccaccacata 10587379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 485 - 652
Target Start/End: Complemental strand, 26198608 - 26198440
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| ||||||||||||||||||| | ||| ||||||||||||| |||||||||||| |||||||||||| || |||||||||||||||||| | ||||    
T  26198608 aacaagcaaaaatgatatatattaatattgacaagcaatctcttcggcataaggtgtatcaaagagaccacaaaaaatttacaaagtcagcacttaaata 26198509  T
Q  585 cagctacaaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaaaacaa 652  Q
    ||  |||||||||  ||||| | ||||| |||||  | ||||| |||||||||||||||  ||||||||    
T  26198508 caaatacaaatcaaccgatgaccaaacaaacaagcggactcgaccaccacatatgagtctaaaaaacaa 26198440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 485 - 652
Target Start/End: Original strand, 25329252 - 25329420
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| ||||||||||||||||||| | ||| ||||||||||||| ||||||||||||     | |||||| || |||||||||||||||||| | ||||    
T  25329252 aacaagcaaaaatgatatatattaatattgacaagcaatctcttcggcataaggtgtaggggggggaccacaaaaaatttacaaagtcagcacttaaata 25329351  T
Q  585 cagctacaaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaaaacaa 652  Q
    ||  |||||||||  ||||| | ||||| |||||  | ||||| |||||||||||||||  ||||||||    
T  25329352 caaatacaaatcaaccgatgaccaaacaaacaagcggactcgaccaccacatatgagtctaaaaaacaa 25329420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 520 - 618
Target Start/End: Original strand, 7791843 - 7791941
Alignment:
Q  520 caatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcagtcgatgccaaaacatacaag 618  Q
    ||||||||| |||| ||| | || ||||||||| || ||||||||||||| ||||||||| ||| ||| |||||||||||||||||| |||||||||||    
T  7791843 caatctcttgagcacaagatatatcaaagagacaacaaagaatttacaaaatcagcaccttaatgcagatacaaatcagtcgatgcccaaacatacaag 7791941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 888 - 949
Target Start/End: Original strand, 2156009 - 2156069
Alignment:
Q  888 ttcatttagttaaagaacttaattatcagttcaagttcaactcatttgggttcatgaactaa 949  Q
    |||||||||||||  |||| |||| |||| ||||||| ||||||||| ||||||||||||||    
T  2156009 ttcatttagttaacaaactaaattttcagatcaagtttaactcattt-ggttcatgaactaa 2156069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 954
Target Start/End: Original strand, 17441185 - 17441233
Alignment:
Q  905 cttaattatcagttcaagttcaactcatttgggttcatgaactaagttca 954  Q
    ||||||| |||  ||||||||||||||||| |||||||||||||||||||    
T  17441185 cttaattttcaactcaagttcaactcattt-ggttcatgaactaagttca 17441233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 488 - 533
Target Start/End: Original strand, 33024009 - 33024054
Alignment:
Q  488 aaacaaaaatgatatatattaacactgagaagcaatctcttcagca 533  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||||    
T  33024009 aaacaaaaatgatatatattaacaatgacaagtaatctcttgagca 33024054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 9e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 520 - 652
Target Start/End: Original strand, 2186946 - 2187079
Alignment:
Q  520 caatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcagtcgatgccaaaacatacaagt 619  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || ||||||||||   ||||| ||||| |||||     
T  2186946 caatctattcagcataaggtgtaccaaagagaccacgaagaatatacaaagttagcacctgaatatagatacaaatcagctaatgcccaaacaaacaagc 2187045  T
Q  620 tggctcga-caccacatatgagtcccaaaaacaa 652  Q
     ||||||| |||||||||||||||||||||||||    
T  2187046 gggctcgaccaccacatatgagtcccaaaaacaa 2187079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 486 - 595
Target Start/End: Complemental strand, 16573026 - 16572917
Alignment:
Q  486 acaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatac 585  Q
    |||| ||||||||||||||||||||||||| |||||||||||| | |||||| |||| |||||||||||| ||||||| ||||| ||||||||| |||||    
T  16573026 acaagcaaaaatgatatatattaacactgataagcaatctctttaacataagttgtatcaaagagaccacaaagaattcacaaaatcagcacctaaatac 16572927  T
Q  586 agctacaaat 595  Q
    |  |||||||    
T  16572926 atatacaaat 16572917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 18460922 - 18460856
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagac 552  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| | ||||||||||    
T  18460922 aacaaacaaaaatgatatatattaacactgacacgcaatctcttcagca-aaggtatgccaaagagac 18460856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 3e-35; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 485 - 652
Target Start/End: Original strand, 9895165 - 9895333
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| ||||||||||||||||||||||||| |||||||||  |||| | ||||||||||||||| ||||| |||||||||||| ||||  |||||||||    
T  9895165 aacaagcaaaaatgatatatattaacactgacaagcaatcttctcagtacaaggtgtaccaaagaaaccactaagaatttacaatgtcaatacctgaata 9895264  T
Q  585 cagctacaaatcagtcgatgccaaaacatacaagttggctcg-acaccacatatgagtcccaaaaacaa 652  Q
    ||| ||||||| |||||||||| ||||||| |||  ||||||  ||||||||| || | ||||||||||    
T  9895265 cagatacaaattagtcgatgcccaaacataaaagcgggctcgtccaccacatacgaataccaaaaacaa 9895333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 492 - 648
Target Start/End: Complemental strand, 15126127 - 15125970
Alignment:
Q  492 aaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctac 591  Q
    |||||||||||||||| ||| ||| || |||||||||||||| ||| ||||||||||||| ||  |||| ||||||||||||||||||||| |||  |||    
T  15126127 aaaaatgatatatattcacagtgacaaacaatctcttcagcacaagatgtaccaaagagaacataaagattttacaaagtcagcacctgaaaacatatac 15126028  T
Q  592 aaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaaa 648  Q
    |||||||  |||||| ||||| |||||  ||||||| |||||||||||||||||||||    
T  15126027 aaatcagctgatgcccaaacaaacaagcgggctcgaccaccacatatgagtcccaaaa 15125970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 485 - 649
Target Start/End: Complemental strand, 38652618 - 38652453
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| ||||||| ||||||| ||||||||| || ||||||| |  | | ||||||||||||||||| ||||||||||| ||||||||| ||| |||| |    
T  38652618 aacaagcaaaaattatatatactaacactgataaccaatctcattggtacaaggtgtaccaaagagatcacgaagaattcacaaagtcatcacatgaaaa 38652519  T
Q  585 cagctacaaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaaaa 649  Q
     || |||||||||  | ||||| |||||||||||  ||||||| ||||||||||||||||||||||    
T  38652518 tagatacaaatcaaccaatgcccaaacatacaagcgggctcgaccaccacatatgagtcccaaaaa 38652453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 485 - 609
Target Start/End: Complemental strand, 25256095 - 25255971
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| |||||||||||| |||||||||||| |||||| |||||||||| || |||||| ||| ||| || ||||||||||||| || | ||||||||||    
T  25256095 aacaagcaaaaatgatatgtattaacactgacaagcaacctcttcagcacaaagtgtactaaaaagatcatgaagaatttacaatgttaacacctgaata 25255996  T
Q  585 cagctacaaatcagtcgatgccaaa 609  Q
    ||  |||||||||| ||||| ||||    
T  25255995 catatacaaatcagccgatgtcaaa 25255971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 485 - 552
Target Start/End: Original strand, 5643758 - 5643825
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagac 552  Q
    ||||| ||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||    
T  5643758 aacaagcaaaaatgatatatattaatactgacacacaatctcttcagcataaggtgtaccaaagagac 5643825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 485 - 552
Target Start/End: Original strand, 5649610 - 5649677
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagac 552  Q
    ||||| ||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||    
T  5649610 aacaagcaaaaatgatatatattaatactgacacacaatctcttcagcataaggtgtaccaaagagac 5649677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 485 - 558
Target Start/End: Original strand, 21304568 - 21304641
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaa 558  Q
    |||||| |||||||||||||||||| || || |  |||||||||| | |||||||||| |||||| ||||||||    
T  21304568 aacaaaaaaaaatgatatatattaatacagacacacaatctcttcggtataaggtgtatcaaagaaaccacgaa 21304641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 889 - 954
Target Start/End: Original strand, 48634463 - 48634527
Alignment:
Q  889 tcatttagttaaagaacttaattatcagttcaagttcaactcatttgggttcatgaactaagttca 954  Q
    ||||||| |||| |||||||||| | || ||||||||||||||||| ||||||||||| |||||||    
T  48634463 tcatttatttaacgaacttaatttttagctcaagttcaactcattt-ggttcatgaaccaagttca 48634527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 891 - 952
Target Start/End: Complemental strand, 49001113 - 49001053
Alignment:
Q  891 atttagttaaagaacttaattatcagttcaagttcaactcatttgggttcatgaactaagtt 952  Q
    |||||||||| |||||||||| ||||||||||||||| | ||||  |||||| |||||||||    
T  49001113 atttagttaacgaacttaattttcagttcaagttcaatttattt-tgttcataaactaagtt 49001053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 491 - 647
Target Start/End: Complemental strand, 18892560 - 18892403
Alignment:
Q  491 caaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagcta 590  Q
    |||||||| ||||||||||||  || || |||||||||| | | || |||||| ||||||||||| |||||||||||||||||||||||||| |||| ||    
T  18892560 caaaaatggtatatattaacatcgacaaacaatctcttcggtacaaagtgtacaaaagagaccacaaagaatttacaaagtcagcacctgaaaacagata 18892461  T
Q  591 caaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaa 647  Q
    |||||||| ||||||  ||||| |||||| ||||||| ||||||||||||||| ||||    
T  18892460 caaatcagccgatgctcaaacaaacaagtgggctcgaccaccacatatgagtctcaaa 18892403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 485 - 586
Target Start/End: Complemental strand, 41404971 - 41404874
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||||| || ||||||    ||||| |||||||||||||||||||| ||||||||||    
T  41404971 aacaagcaaaaatgatatatattaacactgacaaacaatctcttcagcacaatgtgtac----gagactacgaagaatttacaaagtcaacacctgaata 41404876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 521 - 599
Target Start/End: Complemental strand, 22626453 - 22626375
Alignment:
Q  521 aatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcagt 599  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||  || ||||||||    
T  22626453 aatctcttcagcataaggtgtacaaaagagaccacgaataatatacaaagtcagcatctgaatacaaatataaatcagt 22626375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 3e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 491 - 652
Target Start/End: Original strand, 20452160 - 20452322
Alignment:
Q  491 caaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagcta 590  Q
    |||||||  |||||||||||||||| |   ||||||||||||| |||||||||||||||||||| ||| ||| ||||||||| |  |||||||| || ||    
T  20452160 caaaaatcgtatatattaacactgacacaaaatctcttcagcacaaggtgtaccaaagagaccatgaaaaatatacaaagtcggatcctgaatatagata 20452259  T
Q  591 caaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaaaacaa 652  Q
    ||||| ||||||| || ||||| |||||  ||||| | |||||||||||||||||||||||||    
T  20452260 caaattagtcgatacccaaacaaacaagcgggctctaccaccacatatgagtcccaaaaacaa 20452322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 485 - 648
Target Start/End: Complemental strand, 17263721 - 17263561
Alignment:
Q  485 aacaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaata 584  Q
    ||||| |||||||||||| ||| |||||||| ||||||||||||||||| |||||||| ||||||||||||  || ||||| |||||||||||||||| |    
T  17263721 aacaagcaaaaatgatatgtat-aacactgacaagcaatctcttcagcacaaggtgtatcaaagagaccac--ag-atttagaaagtcagcacctgaaaa 17263626  T
Q  585 cagctacaaatcagtcgatgccaaaacatacaagttggctcga-caccacatatgagtcccaaaa 648  Q
    ||  |||||||||||||||| ||| |||   |||  ||||| | |||||||||||||| ||||||    
T  17263625 catatacaaatcagtcgatgtcaatacaagtaagcgggctctaccaccacatatgagttccaaaa 17263561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 525 - 652
Target Start/End: Complemental strand, 22908726 - 22908598
Alignment:
Q  525 tcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcagtcgatgccaaaacatacaagttggct 624  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||  ||||||  |||||||||  |||| || ||||| |||||  | ||    
T  22908726 tcttcaacacaaggtgtaccaaagagaccacaaagaatttacaaagtcagcaccaaaatacatatacaaatcacccgatacccaaacaaacaaggggact 22908627  T
Q  625 cga-caccacatatgagtcccaaaaacaa 652  Q
    ||| ||||||| ||||||| |||| ||||    
T  22908626 cgaccaccacacatgagtctcaaatacaa 22908598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 503 - 652
Target Start/End: Complemental strand, 22735365 - 22735218
Alignment:
Q  503 atattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcagtcga 602  Q
    ||||||||||||| |||||  |||||||||| |||||||||||||| ||  |   | |||||||||||||||||||| || |||  |||||||||| |||    
T  22735365 atattaacactgacaagcacactcttcagcacaaggtgtaccaaagtgaa-atatataatttacaaagtcagcacctaaacacatatacaaatcagccga 22735267  T
Q  603 tgccaaaacatacaagttggctcga-caccacatatgagtcccaaaaacaa 652  Q
    |||| |||||||||||  ||  ||| ||||||||||||||| |||||||||    
T  22735266 tgcctaaacatacaag--ggggcgaccaccacatatgagtctcaaaaacaa 22735218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 889 - 954
Target Start/End: Complemental strand, 9505250 - 9505186
Alignment:
Q  889 tcatttagttaaagaacttaattatcagttcaagttcaactcatttgggttcatgaactaagttca 954  Q
    ||||||| |||| |||||||||| |||| ||||||||||||||||| ||||||||||| |||||||    
T  9505250 tcatttatttaacgaacttaattttcagctcaagttcaactcattt-ggttcatgaaccaagttca 9505186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 889 - 934
Target Start/End: Original strand, 18074587 - 18074632
Alignment:
Q  889 tcatttagttaaagaacttaattatcagttcaagttcaactcattt 934  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||||    
T  18074587 tcatttagttaacgaacttaattttcagttcaaattcaactcattt 18074632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 889 - 954
Target Start/End: Original strand, 5418689 - 5418753
Alignment:
Q  889 tcatttagttaaagaacttaattatcagttcaagttcaactcatttgggttcatgaactaagttca 954  Q
    |||||||||||| |||||||||  | || |||||||| |||| ||| |||||||||||||||||||    
T  5418689 tcatttagttaacgaacttaatctttagctcaagttcgactcgttt-ggttcatgaactaagttca 5418753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 521 - 652
Target Start/End: Complemental strand, 41578253 - 41578121
Alignment:
Q  521 aatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcagtcgatgccaaaacatacaagtt 620  Q
    ||||||||||||| |||||||| ||||||||||| ||| ||| ||||||| |||||||  ||||||  |||||||||| |||| || ||||| |||||      
T  41578253 aatctcttcagcacaaggtgtatcaaagagaccatgaaaaatatacaaaggcagcaccgaaatacatatacaaatcagccgatacccaaacaaacaagcg 41578154  T
Q  621 ggctcga-caccacatatgagtcccaaaaacaa 652  Q
    ||||||| |||||||||||||||||||||||||    
T  41578153 ggctcgaccaccacatatgagtcccaaaaacaa 41578121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 486 - 586
Target Start/End: Original strand, 32027110 - 32027210
Alignment:
Q  486 acaaacaaaaatgatatatattaacactgagaagcaatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatac 585  Q
    |||| |||||||| | |||||||||| ||  ||||||||||||||||| || |||||  ||||||||||| |||||||||||||||| ||||||||||||    
T  32027110 acaagcaaaaatggtgtatattaacagtggcaagcaatctcttcagcacaaagtgtattaaagagaccacaaagaatttacaaagtcggcacctgaatac 32027209  T
Q  586 a 586  Q
    |    
T  32027210 a 32027210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 491 - 569
Target Start/End: Complemental strand, 10831596 - 10831516
Alignment:
Q  491 caaaaatgatatatattaacactgagaagcaatctcttca--gcataaggtgtaccaaagagaccacgaagaatttacaaa 569  Q
    ||||||||||||||||||||||||| || |||||||||||  ||||||| |||| |||||||||||| |||||||||||||    
T  10831596 caaaaatgatatatattaacactgacaaacaatctcttcagcgcataagatgtatcaaagagaccacaaagaatttacaaa 10831516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 521 - 603
Target Start/End: Original strand, 30698741 - 30698823
Alignment:
Q  521 aatctcttcagcataaggtgtaccaaagagaccacgaagaatttacaaagtcagcacctgaatacagctacaaatcagtcgat 603  Q
    ||||||||||||||||||||||| | ||||| ||| |||||| ||  ||||||||||||||||| || || |||| |||||||    
T  30698741 aatctcttcagcataaggtgtactagagagatcacaaagaatatatcaagtcagcacctgaatatagatataaattagtcgat 30698823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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