View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4382-Insertion-20 (Length: 128)
Name: NF4382-Insertion-20
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4382-Insertion-20 |
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| [»] chr4 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 5e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 36207285 - 36207405
Alignment:
| Q |
8 |
atttgttgttactttctttcgggaccggaactcctatcgcctgtagttctagctttccccataaatcatctaacatcaacacaaacttctttcctttcaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36207285 |
atttgttgttactttctttcgggaccggaactcctatcgcctgtagttctagctttccccataaatcatctaacatcaacacaaacttctttcctttcaa |
36207384 |
T |
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| Q |
108 |
ctgttcatgaatcttcgctac |
128 |
Q |
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| T |
36207385 |
ccgttcatgaatcttcgctac |
36207405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 36232606 - 36232720
Alignment:
| Q |
8 |
atttgttgttactttctttcgggaccggaactcctatcgcctgtagttctagctttccccataaatcatctaacatcaacacaaacttctttcctttcaa |
107 |
Q |
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|||||||||||| |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36232606 |
atttgttgttacattctttggggaccggaactcctatcgcttctagttctagctttccccataaatcatctaacatcaatacaaacttctttcctttcaa |
36232705 |
T |
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| Q |
108 |
ctgttcatgaatctt |
122 |
Q |
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| T |
36232706 |
ctgttcatgaatctt |
36232720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 35901588 - 35901539
Alignment:
| Q |
8 |
atttgttgttactttctttcgggaccggaactcctatcgcctgtagttcta |
58 |
Q |
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| T |
35901588 |
atttgttgttactttctttc-ggagcggaactcctattgcttgtagttcta |
35901539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 36222696 - 36222768
Alignment:
| Q |
8 |
atttgttgttactttctttcgggaccggaactcctatcgcctgtagttctagctttccccataaatcatctaa |
80 |
Q |
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||||||| ||||||| || | ||| |||| ||||| ||| ||||||||||||||| |||| ||||||||||| |
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| T |
36222696 |
atttgtttttactttgttccatgactggaaatcctaacgcttgtagttctagcttttcccacaaatcatctaa |
36222768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 7e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 25473764 - 25473644
Alignment:
| Q |
8 |
atttgttgttactttctttcgggaccggaactcctatcgcctgtagttctagctttccccataaatcatctaacatcaacacaaacttctttcctttcaa |
107 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25473764 |
atttgttgttactttctttcaggatcggaactcctatcgcctgtagttctagctttccccataaatcatctaacatcaacgcaaacttctttcctttcaa |
25473665 |
T |
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| Q |
108 |
ctgttcatgaatcttcgctac |
128 |
Q |
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| ||||||||||||||||||| |
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| T |
25473664 |
ccgttcatgaatcttcgctac |
25473644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 29133939 - 29133990
Alignment:
| Q |
39 |
tcctatcgcctgtagttctagctttccccataaatcatctaacatcaacaca |
90 |
Q |
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| T |
29133939 |
tcctatcgcttgtagttctagctttccccataaatcatctaacatcaacaca |
29133990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 9767104 - 9767204
Alignment:
| Q |
8 |
atttgttgttactttctttcgggaccggaactcctatcgcctgtagttctagctttccccataaatcatctaacatcaacacaaacttctttcctttcaa |
107 |
Q |
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|||||||||||||||||||| |||| |||| |||| | | || |||||||||||| |||| |||||||| |||||||||| |||||| ||| ||||||| |
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| T |
9767104 |
atttgttgttactttctttcaggactggaaaacctaactcttgaagttctagcttttcccacaaatcatccaacatcaacaaaaactttttttctttcaa |
9767203 |
T |
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| Q |
108 |
c |
108 |
Q |
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| T |
9767204 |
c |
9767204 |
T |
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