View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4382-Insertion-4 (Length: 1056)
Name: NF4382-Insertion-4
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4382-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 748; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 8 - 927
Target Start/End: Complemental strand, 39396585 - 39395665
Alignment:
| Q |
8 |
gtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataactttactgaatcaagatttgtccaaaatacggcactcgcagca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| || |
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| T |
39396585 |
gtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataacttcactgaatcaagatgtgtccaaaatacggcacttgcaaca |
39396486 |
T |
|
| Q |
108 |
tccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39396485 |
tccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgtaagaaactctcaaagaagatt |
39396386 |
T |
|
| Q |
208 |
gataagtactccatgcccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaatctcattgttgtgtggtact |
307 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
39396385 |
gataagtactccatgcc-ttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaatctcattgtcatgtggtact |
39396287 |
T |
|
| Q |
308 |
ttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgtcttaggtggtctaaatgatt |
407 |
Q |
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| T |
39396286 |
ttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgtcttaggtggtctaaatgatt |
39396187 |
T |
|
| Q |
408 |
gttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacagacacgaaatagggtctcaaaa |
507 |
Q |
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| T |
39396186 |
gttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacagacacgaaatagggtctcaaaa |
39396087 |
T |
|
| Q |
508 |
taggtgtacgtataatctgtgaaactatgtacacannnnnnnnnaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacaat |
607 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39396086 |
taggtgtacgtataatctgtgaaattatgtacaca-ttttttttaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacagt |
39395988 |
T |
|
| Q |
608 |
attacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggtattattatnnnnnnnnnnn |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395987 |
attacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggtattattattagtagcagta |
39395888 |
T |
|
| Q |
708 |
nnnnnnctttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaatcatcaaaatgtgatccat |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39395887 |
gtagtactttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaatcatcaaaatgtgattcat |
39395788 |
T |
|
| Q |
808 |
ctaaatgatcaaagtcatcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatc-aatattgaaccctttagtgtatc |
906 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39395787 |
ctaaatgatcaaaatcttcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaatattgaaccctttagtgtatc |
39395688 |
T |
|
| Q |
907 |
atc-tctac-ataatttctttat |
927 |
Q |
| |
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||| ||||| ||||||||||||| |
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| T |
39395687 |
atcttctacaataatttctttat |
39395665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
153 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
212 |
Q |
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| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
198 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
272 |
Q |
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||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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