View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4382-Insertion-7 (Length: 968)
Name: NF4382-Insertion-7
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4382-Insertion-7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 819; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 8 - 968
Target Start/End: Complemental strand, 43135957 - 43134999
Alignment:
| Q |
8 |
atatccccactatgtgtgtcagtgtcactatccaccccgtcaaataagtacgactagtaacggttgtttgagtttagacgtacatttacatatggattca |
107 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135957 |
atatctccactatgtgtgttagtgtcactatccaccccgtcaaataagtacgactagtaacggttgtttgagtttagacgtacatttacatatggattca |
43135858 |
T |
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| Q |
108 |
agagcattctataatattcaaccatttagtcttaattatatcgtgagtggaaagcatcaaatatgaaagaactaccagtaccaaatgtaagtcgtgctta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43135857 |
agagcattctataatattcaaccatttagtcttaattatatcgtgagtggaaagcatcaaatatgaaagaactaccggtaccaaatgtaagtcgtgctta |
43135758 |
T |
|
| Q |
208 |
gggaaagtatgaagaaatgtctattccccctaactcaaggcattgtgcaagatacattctccactaaccctaaaccgaactagcccctattgaccataaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135757 |
gggaaagtatgaagaaatgtctattccccctaactcaaggcattgtgcaagatacattctccactaaccctaaaccgaactagcccctattgaccataaa |
43135658 |
T |
|
| Q |
308 |
ctttgtatcattgacatgactaat-aannnnnnnnggacagacacatgactaattaataacatgaatttcaccatgtttttaatttccttaagttaaggg |
406 |
Q |
| |
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|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135657 |
ctttgtatcattgacatgactaattaattttttttggacagacgcatgactaattaataacatgaatttcaccatgtttttaatttccttaagttaaggg |
43135558 |
T |
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| Q |
407 |
ccttaatgaaaaatagtactcaattgaacattctacctctcatttcgtgccagagaacaactagcaacaaagggtttttgaatagaagataaagaaaata |
506 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135557 |
ccttaacgaaatatagtactcaattgaacattctacctctcatttcttgccagagaacaactagcaacaaagggtttttgaatagaagataaagaaaata |
43135458 |
T |
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| Q |
507 |
tgttacaacaaaatacaaacgtggaaggatgagtacatgatgaaattgcaagcagagaagtgctagtagtgaccgagaatgcgcagacaaaatcacaaaa |
606 |
Q |
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| T |
43135457 |
tgttacaacaaaatacaaacgtggaaggatgagtacatgatgaaattgcaagcagagaagtgctagtagtgaccgagaatgcgcagacaaaatcac-aaa |
43135359 |
T |
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| Q |
607 |
caatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaagggcccaggttgttgacatgatggtgcagctgtttgga |
706 |
Q |
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| T |
43135358 |
caatgagttgaaatttttaagtaaaattgtagtgaggaatcctaaattgagattctagttaagggcccaggttgttgacatgatggtgcagctg-ttgga |
43135260 |
T |
|
| Q |
707 |
gttgttgtggtcaaggcatgggagcatatgggaaagggcaaatggtgttcaaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcggga |
806 |
Q |
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| T |
43135259 |
gttgttgtggtcaaggcatgggagcatat-ggaaaggacaaatggtgttc-aagcactatttagctcgttgaaggatatttgcaaggagcgtcttcggga |
43135162 |
T |
|
| Q |
807 |
ggcaaaggagtcctgtaaggctgatcatatagctgagatgcagtagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcgtgttg |
906 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43135161 |
ggcaaaggaggcctgcaaggctgatcatatagctgagatgcaggagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcatgttg |
43135062 |
T |
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| Q |
907 |
ttcgctgacaagggtgtcacctatgtgcatgtcgcttacttgaagtatttc-aagacttggag |
968 |
Q |
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| T |
43135061 |
ttcgctaacaagagtgtcacctatgtggatgtcgcttacttgaggtatttcgaagacttggag |
43134999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 760 - 958
Target Start/End: Complemental strand, 17999448 - 17999251
Alignment:
| Q |
760 |
gcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggcaaaggagtcctgtaaggctgatcatatagctgagatgcagtagaagcgag |
859 |
Q |
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|||| |||||||| |||||| ||||||| |||||||||||||| | ||||| || || ||| || | || |||| | |||||||||||| ||||||| |
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| T |
17999448 |
gcacgatttagctggttgaatgatattttcaaggagcgtcttcagaaggcatagcaggcctatatgt-tggtcatttggctgagatgcaggagaagcgga |
17999350 |
T |
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| Q |
860 |
aaaaatctctccacatatatctgctctacttggtggatatcgtgttgttcgctgacaagggtgtcacctatgtgcatgtcgcttacttgaagtatttca |
958 |
Q |
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| T |
17999349 |
aacagtctttccgcatatatttgctatacttgatgggtatcatgctcttcactgacaagagtgccacctatgtggatgtcacttatttgaggtacttca |
17999251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 607 - 666
Target Start/End: Complemental strand, 35345459 - 35345400
Alignment:
| Q |
607 |
caatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagtt |
666 |
Q |
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| T |
35345459 |
caatgagttgaaatttctaagaaaaattgcaatgaaaaatcctaaattgagattctagtt |
35345400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 760 - 958
Target Start/End: Original strand, 28769138 - 28769335
Alignment:
| Q |
760 |
gcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggcaaaggagtcctgtaaggctgatcatatagctgagatgcagtagaagcgag |
859 |
Q |
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| T |
28769138 |
gcacgatttagctggttgaatgatattttcaaggagcgtcttcagaaggcacaataggcctacatgt-tggtcatttggctgagatgcaggagaagcgga |
28769236 |
T |
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| Q |
860 |
aaaaatctctccacatatatctgctctacttggtggatatcgtgttgttcgctgacaagggtgtcacctatgtgcatgtcgcttacttgaagtatttca |
958 |
Q |
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| T |
28769237 |
aacaatctttccgcatatatttgctatacttgatgggtatcatgctcttcactgacaagagcgccacctatgtggatgtcacttatttgaggtacttca |
28769335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 593 - 669
Target Start/End: Original strand, 32809820 - 32809895
Alignment:
| Q |
593 |
acaaaatcacaaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaag |
669 |
Q |
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| T |
32809820 |
acaaaatcacaga-caatgagtcaaaatttcaaagtaaaattgcaatgagaaatactaaattgggattctagttaag |
32809895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 604 - 670
Target Start/End: Original strand, 27877195 - 27877261
Alignment:
| Q |
604 |
aaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaagg |
670 |
Q |
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| T |
27877195 |
aaacaatgagtcgaaatttctagatgaaattgcaatgaggaatcttaaattgagattctaattaagg |
27877261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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