View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4382-Insertion-8 (Length: 911)

Name: NF4382-Insertion-8
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4382-Insertion-8
NF4382-Insertion-8
[»] chr4 (3 HSPs)
chr4 (8-623)||(47967386-47968004)
chr4 (779-894)||(47967119-47967234)
chr4 (609-696)||(47967278-47967365)
[»] chr5 (5 HSPs)
chr5 (263-696)||(37338315-37338744)
chr5 (11-389)||(11299693-11300062)
chr5 (8-175)||(37338107-37338274)
chr5 (731-894)||(37338778-37338941)
chr5 (482-584)||(11299574-11299676)
[»] chr6 (3 HSPs)
chr6 (263-692)||(15297129-15297556)
chr6 (731-894)||(15297593-15297756)
chr6 (8-175)||(15296937-15297088)
[»] chr8 (1 HSPs)
chr8 (755-842)||(27264427-27264512)


Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 623
Target Start/End: Complemental strand, 47968004 - 47967386
Alignment:
Q  8 acatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttgtcttatccgac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47968004 acatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagtttgtctgtgaagaagtttgtcttatccgac 47967905  T
Q  108 ccaaaatccagtttctgtagctcctcccttggctctctactttcttttaaaggggttctcatgctaaaacatccgtggtttaatgagataacccttattt 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  47967904 ccaaaatccagtttctgtagctcctcccttggctctttactttcttttaaaagggttctcatgctaaaaccttcgtggtttaatgagataacccttattt 47967805  T
Q  208 cctgctt---tgttttgggatgttacnnnnnnnnnatgtaatgtgaaactatccgtggtttattgagcaatgtttcgttagcaatatttttgtatctcct 304  Q
    |||||||   ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47967804 cctgcttctttgttttgggatgttacttttttt--atgtaatgtgaaactatccgtggtttattgagcaatgttttgttagcaatatttttgtatctcct 47967707  T
Q  305 tctgaaataatctacctattaagtagttgatatttgtttgatttgatatccatgtacgattccgttttccttaaaaatagcagctaatcatcctccttct 404  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  47967706 tctgaaataatctacttattaagtagttgatatttgtttgatttgatatccatttacgattccgttttccttaaaaatagcagttaatcatcctccttct 47967607  T
Q  405 taaaatcatttttattagtcattatcattattaatttatatacaaaattttctttgatgggggagaaacggttgtacaaagggagaaaatatattctttc 504  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47967606 taaaatcatttttattagtcattatcattaataatttatatacaaaatttcctttgatgggggagaaacggttgtacaaagggagaaaatatattctttc 47967507  T
Q  505 tatataaactcacacacatttgctttcacggtaatgtagagaaaaa-gaccattgttcttcttttatttattcaatg-ttttagaaaatgaattttgagg 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47967506 tatataaactcacacacatttgctttcacggtaatgtagagaaaaaggaacattgttcttcttttatttattcaatgtttttagaaaatgaattttgagg 47967407  T
Q  603 tatctaacttcaaccaaaact 623  Q
    |||||||||||||||||||||    
T  47967406 tatctaacttcaaccaaaact 47967386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 779 - 894
Target Start/End: Complemental strand, 47967234 - 47967119
Alignment:
Q  779 tgagaggttttctcaccgtgacattttcaattagaggggcattggaatttttatgcattttgtattcaattcttcattccgtataaaatcacattataaa 878  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  47967234 tgagaggttttctcaccgtgacattttcaattagaggggcattggaatttttatgcattttgtattcaattcttcattctctataaaatcacattataaa 47967135  T
Q  879 ggcatatcatttataa 894  Q
    ||||||||||||||||    
T  47967134 ggcatatcatttataa 47967119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 609 - 696
Target Start/End: Complemental strand, 47967365 - 47967278
Alignment:
Q  609 acttcaaccaaaactattgtaaatgatacagtaaattacattctaaccctccccttaattatatgaagtttctcaagttattttcagc 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47967365 acttcaaccaaaactattgtaaatgatacagtaaattacattctaaccctccccttaattatatgaagtttctcaggttattttcagc 47967278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 307; Significance: 1e-172; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 263 - 696
Target Start/End: Original strand, 37338315 - 37338744
Alignment:
Q  263 tttattgagcaatgtttcgttagcaatatttttgtatctccttctgaaataatctacctattaagtagttgatatttgtttgatttgatatccatgtacg 362  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37338315 tttattgagcaatgttccgttaacaatatttttgtatctccttctgaaataatctacctattaagtagttgatatttgtttgattcgatatccatgtacg 37338414  T
Q  363 attccgttttccttaaaaatagcagctaatcatcctccttcttaaaatcatttttattagtcattatcattattaatttatatacaaaattttctttgat 462  Q
    |||||||||| |||| |||||| |||| ||  | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||    
T  37338415 attccgtttttcttagaaatagtagctgattgtgctccttcttaaaatcatttttattagtcattatcattaataattaatatacaaaatttccttttat 37338514  T
Q  463 gggggagaaacggttgtacaaagggagaaaatatattctttctatataaactcacacacatttgctttcacggtaatgtagagaaaaagaccattgttct 562  Q
    ||||||||||| ||||| ||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||  |||||| |    
T  37338515 gggggagaaactgttgtccaaagggagaatatatgttctttctatataaattcacacacatttgttttcacggtaatgtagagaaaaagaatattgtttt 37338614  T
Q  563 tcttttatttattcaatgt-tttagaaaatgaattttgaggtatctaacttcaaccaaaactattgtaaatgatacagtaaattacattctaaccctccc 661  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37338615 tcttttatttattcaatgtgtttagaaaatgaaatttgaggtatctaacttcaaccaaaactattgtaaatgatatagtaaattacattctaaccctccc 37338714  T
Q  662 cttaattatatgaagtttctcaagttattttcagc 696  Q
    |     |||||||||||||||||||||||||||||    
T  37338715 c-----tatatgaagtttctcaagttattttcagc 37338744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 11300062 - 11299693
Alignment:
Q  11 tgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttgtcttatccgaccca 110  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||     ||||||    
T  11300062 tgtacatggtttccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagtttgtctttgaagaagtttgtct-----gaccca 11299968  T
Q  111 aaatccagtttctgtagctcctcccttggctctctactttcttttaaaggggttctcatgctaaaacatccgtggtttaatgagataacccttatttcct 210  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||    | |||  | || |||||||||||    
T  11299967 aaatccagtttttgtagctcctcccttggctctctgctttcttttaaaagggttctcatgctaaaccattcgt----ttatgcta-aatccttatttcct 11299873  T
Q  211 gctt---tgttttgggatgttacnnnnnnnnnatgtaatgtgaaactatccgtggtttattgagcaatgtttcgttagcaatatttttgtatctccttct 307  Q
    ||||   ||||||  ||||||||         ||||||| |||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  11299872 gcttctttgttttaagatgttacttttttt--atgtaatttgaaactatccgtggtttattgagcaatgttctgttagcaatatttctgtatctccttct 11299775  T
Q  308 gaaataatctacctattaagtagttgatatttgtttgatttgatatccatgtacgattccgttttccttaaaaatagcagct 389  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  11299774 gaagtaatctacctattaagtagttgatatttgtttgatttgatatccatgtacgattccgttttcctttgaaatagcagct 11299693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 37338107 - 37338274
Alignment:
Q  8 acatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttgtcttatccgac 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||    
T  37338107 acatgtacatggttcccttaattgtatttgctgtttttataaatttagtttcagatttctgtggaaaagtttgtctgcgaagaagtttgtcttatctgac 37338206  T
Q  108 ccaaaatccagtttctgtagctcctcccttggctctctactttcttttaaaggggttctcatgctaaa 175  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  37338207 ccaaagtccagtttctgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaa 37338274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 731 - 894
Target Start/End: Original strand, 37338778 - 37338941
Alignment:
Q  731 tatattcgttgccctataacttacattttgcatattggtttgtaagcgtgagaggttttctcaccgtgacattttcaattagaggggcattggaattttt 830  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  37338778 tatattcgttgccatgtaacttacattttgcatattggtttgtaagcatgagaggttttcttaccatgacattttgaattagaggggcattggaattttt 37338877  T
Q  831 atgcattttgtattcaattcttcattccgtataaaatcacattataaaggcatatcatttataa 894  Q
    || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37338878 attcatgttgtattcaattcttcattctgtataaaatcacattataaaggcatatcatttataa 37338941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 482 - 584
Target Start/End: Complemental strand, 11299676 - 11299574
Alignment:
Q  482 aaagggagaaaatatattctttctatataaactcacacacatttgctttcacggtaatgtagagaaaaagaccattgttcttcttttatttattcaatgt 581  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  11299676 aaagggagaaaatatgttctttttatataaactcacacacatttgctttcacggtaatgtagagaaaaagaatattgttcttcttttatttattcaatgt 11299577  T
Q  582 ttt 584  Q
    |||    
T  11299576 ttt 11299574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 263 - 692
Target Start/End: Original strand, 15297129 - 15297556
Alignment:
Q  263 tttattgagcaatgtttcgttagcaatatttttgtatctccttctgaaataatctacctattaagtagttgatatttgtttgatttgatatccatgtacg 362  Q
    |||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15297129 tttattgagcaatgttccgttagcaatttttttgtatctccttatgaaataatctacctattaagtagttgatatttgtttgattcgatatccatgtacg 15297228  T
Q  363 attccgttttccttaaaaatagcagctaatcatcctccttcttaaaatcatttttattagtcattatcattattaatttatatacaaaattttctttgat 462  Q
    |||||||||| |||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||    
T  15297229 attccgtttttcttagaaatagcagctgatcgtgctccttcttaaaatcatttttattagtcattatcattaataattaatatacaaaatttccttttat 15297328  T
Q  463 gggggagaaacggttgtacaaagggagaaaatatattctttctatataaactcacacacatttgctttcacggtaatgtagagaaaaagaccattgttct 562  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||   |    
T  15297329 gggggagaaacggttgtacaaagggaggatatatgttctttctatataaactcacacacatttgttttcacggtaatgtagagaaaaagaatattg---t 15297425  T
Q  563 tcttttatttattcaatg-ttttagaaaatgaa-ttttgaggtatctaacttcaaccaaaactattgtaaatgatacagtaaattacattc----taacc 656  Q
    |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  15297426 tcttttatttattcaatgtttttagaaaatgaatttttcaggtatctaacttcaaccaaaactattgtaaatgatacagtaaattacattctaattaacc 15297525  T
Q  657 ctccccttaattatatgaagtttctcaagttatttt 692  Q
    ||||||     |||||||||||||||||||||||||    
T  15297526 ctcccc-----tatatgaagtttctcaagttatttt 15297556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 731 - 894
Target Start/End: Original strand, 15297593 - 15297756
Alignment:
Q  731 tatattcgttgccctataacttacattttgcatattggtttgtaagcgtgagaggttttctcaccgtgacattttcaattagaggggcattggaattttt 830  Q
    |||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || |||| ||||||||||||||||    
T  15297593 tatattcgttgcactgtaacttacattttgcatattggtttgtaagcatgagaggttttctcaccatgacattttgaaatagatgggcattggaattttt 15297692  T
Q  831 atgcattttgtattcaattcttcattccgtataaaatcacattataaaggcatatcatttataa 894  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15297693 atgcattttgtattcaattcttcattctgtataaaatcacattataaaggcatatcatttataa 15297756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 15296937 - 15297088
Alignment:
Q  8 acatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttgtcttatccgac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||                |||||||||||| |||    
T  15296937 acatgtacatggttcccttaattgtatttgctgtttttacaaatttagattcagatttctgtggagaa----------------gtttgtcttatctgac 15297020  T
Q  108 ccaaaatccagtttctgtagctcctcccttggctctctactttcttttaaaggggttctcatgctaaa 175  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  15297021 ccaaagtccagtttctgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaa 15297088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 755 - 842
Target Start/End: Complemental strand, 27264512 - 27264427
Alignment:
Q  755 attttgcatattggtttgtaagcgtgagaggttttctcaccgtgacattttcaattagaggggcattggaatttttatgcattttgta 842  Q
    |||||| |||||||||||||||| | ||||||||||||||| ||||||||||| || |  |||||||||| |||||||||||||||||    
T  27264512 attttgaatattggtttgtaagcataagaggttttctcacc-tgacattttcagtt-gtagggcattggagtttttatgcattttgta 27264427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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