View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4382_high_1_N (Length: 593)

Name: NF4382_high_1_N
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4382_high_1_N
NF4382_high_1_N
[»] chr7 (21 HSPs)
chr7 (143-589)||(8017036-8017482)
chr7 (143-589)||(8102766-8103212)
chr7 (146-589)||(39985748-39986191)
chr7 (351-573)||(8635982-8636204)
chr7 (341-489)||(10494097-10494245)
chr7 (290-489)||(17268185-17268384)
chr7 (377-526)||(8667752-8667901)
chr7 (377-504)||(8671338-8671465)
chr7 (377-489)||(13333179-13333291)
chr7 (200-243)||(3147420-3147463)
chr7 (351-425)||(7877520-7877594)
chr7 (332-526)||(8590926-8591120)
chr7 (281-417)||(6789749-6789885)
chr7 (290-526)||(8602220-8602456)
chr7 (341-489)||(17260538-17260686)
chr7 (155-243)||(29577641-29577729)
chr7 (443-540)||(6789911-6790008)
chr7 (143-228)||(8628631-8628716)
chr7 (351-504)||(8654757-8654910)
chr7 (341-425)||(3147569-3147653)
chr7 (377-425)||(8659696-8659744)
[»] chr4 (7 HSPs)
chr4 (143-582)||(54396522-54396961)
chr4 (155-573)||(23596224-23596642)
chr4 (155-453)||(23587492-23587790)
chr4 (340-429)||(35132744-35132833)
chr4 (377-526)||(9335577-9335726)
chr4 (161-242)||(30775369-30775450)
chr4 (281-405)||(30775489-30775613)
[»] chr3 (2 HSPs)
chr3 (1-143)||(31426290-31426442)
chr3 (225-286)||(28776805-28776866)
[»] chr2 (12 HSPs)
chr2 (190-589)||(17716316-17716709)
chr2 (377-587)||(17717579-17717789)
chr2 (278-425)||(16657304-16657451)
chr2 (389-589)||(17647658-17647858)
chr2 (341-420)||(12234986-12235065)
chr2 (491-589)||(17703672-17703770)
chr2 (353-477)||(12245141-12245265)
chr2 (351-477)||(7542533-7542659)
chr2 (496-589)||(17666312-17666405)
chr2 (342-418)||(17703843-17703919)
chr2 (497-544)||(17719774-17719821)
chr2 (377-418)||(17621745-17621786)
[»] chr6 (5 HSPs)
chr6 (278-498)||(11133228-11133448)
chr6 (279-534)||(11196958-11197213)
chr6 (279-534)||(11156505-11156760)
chr6 (279-534)||(11200123-11200382)
chr6 (409-534)||(11161514-11161639)
[»] chr1 (1 HSPs)
chr1 (351-425)||(4678345-4678419)
[»] chr5 (1 HSPs)
chr5 (225-286)||(19229769-19229830)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 143 - 589
Target Start/End: Complemental strand, 8017482 - 8017036
Alignment:
Q  143 ccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaaga 242  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  8017482 ccaccaagatgggtatcaccagcagtagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaaga 8017383  T
Q  243 tcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaacc 342  Q
    ||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |  ||    
T  8017382 tcaacacattcttctcgccaacacttgtagcctttttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcc 8017283  T
Q  343 agcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagct 442  Q
     || || ||||| ||||| || || |||||||| || ||||| ||||||||||| || || |||||||| ||||||||||||||||||||||| ||||||    
T  8017282 tgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagct 8017183  T
Q  443 tcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggctttt 542  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8017182 tcagcaatctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagttaacaccaatcattggctttt 8017083  T
Q  543 caccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 589  Q
    |||||||||||||||| |||||||||||||| | |||||| ||||||    
T  8017082 caccaggaccagcaataaccttaaaaggccacaacttcatgtcactc 8017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 143 - 589
Target Start/End: Original strand, 8102766 - 8103212
Alignment:
Q  143 ccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaaga 242  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  8102766 ccaccaagatgggtatcacctgcagtagccttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatcaaaga 8102865  T
Q  243 tcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaacc 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  8102866 tcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaacc 8102965  T
Q  343 agcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagct 442  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || || |||||||| |  ||   ||| |||||||||    
T  8102966 agcgataacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattcttaatggtgacaccaagataagct 8103065  T
Q  443 tcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggctttt 542  Q
    || |||||||| |||||||| || |  ||||| || || ||||||||||  |||||  | || ||||||||||| |||||||||||||||||||||||||    
T  8103066 tcggcaatctcacgcatcttaatcaaaaccatggatgagatttcctcagacgcaaacagtttttcctcacccttgtagttaacaccaatcattggctttt 8103165  T
Q  543 caccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 589  Q
    |||||||||| ||||| |||||||||||||| | |||||| ||||||    
T  8103166 caccaggacccgcaataaccttaaaaggccacaacttcatgtcactc 8103212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 146 - 589
Target Start/End: Original strand, 39985748 - 39986191
Alignment:
Q  146 ccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaagatca 245  Q
    ||||||||||| || || || ||||| || || ||||| ||||||||||||||||| || | ||| ||||||||||| ||||| || |  ||||||||||    
T  39985748 ccaagatgggtgtctccggctgtggctttcacctcaaagataccctcttcaatagttagcaaagagacatcaaaagtaccaccaccaaggtcaaagatca 39985847  T
Q  246 acacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagc 345  Q
    | || |||||||| |||||||| || || || ||||||||||| || ||||| ||||||||||| ||||| || ||||||| ||  ||||| | ||| ||    
T  39985848 agacattcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggc 39985947  T
Q  346 gataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttca 445  Q
     ||||| |||||||| || || |||||||| || || || || |||||||||||||||||||||||||||||||| |  |  ||||| || || |||||     
T  39985948 aataactccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattcttaatggcagaaccaaggtacgcttcg 39986047  T
Q  446 gcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcac 545  Q
    |||||||| |||||||| ||||||||||| || || || || || |||||||||| ||| || ||||| || |||||||||||||| | ||||||||||     
T  39986048 gcaatctcacgcatcttcattagcaccatggaagagatctcttcggcagcaaattccttatcttcacctttgtagttaacaccaataagtggcttttcag 39986147  T
Q  546 caggaccagcaatgaccttaaaaggccatagcttcatctcactc 589  Q
    | || |||| ||| | |||||||||||| | |||||| ||||||    
T  39986148 ctggcccagaaataatcttaaaaggccacaacttcatgtcactc 39986191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 351 - 573
Target Start/End: Complemental strand, 8636204 - 8635982
Alignment:
Q  351 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaat 450  Q
    ||||||||||||| || | || ||| |||||||| ||||| ||||| || |||||||  || |||||||| |||| |||  | ||||| || ||||||||    
T  8636204 caccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattcttgacagatgattccagatatgcctcagcaat 8636105  T
Q  451 ctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccagga 550  Q
    ||||||||||||| | || ||||||||||| |||||||||| |  || |||||| |  |||||||| || || ||| ||||||| || || ||| || ||    
T  8636104 ctctcgcatctttgtcaggaccatagacgatatttcctcaggaaaaagttgcttttgttcacccttgtatttcacaacaatcatgggtttgtcatcacga 8636005  T
Q  551 ccagcaatgaccttaaaaggcca 573  Q
    |||||||| |||||||| |||||    
T  8636004 ccagcaattaccttaaagggcca 8635982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 341 - 489
Target Start/End: Complemental strand, 10494245 - 10494097
Alignment:
Q  341 ccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataag 440  Q
    ||||| ||| ||||||||||  |||| || |  ||||||||||||||||||||||| || |||||||||||||||||||| || | ||| || | ||| |    
T  10494245 ccagcaatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactggtgaccccaaatatg 10494146  T
Q  441 cttcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 489  Q
    | || |||| ||||||||||||||| || |||||||| || ||||||||    
T  10494145 cctctgcaacctctcgcatctttataaggaccatagatgatatttcctc 10494097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 290 - 489
Target Start/End: Original strand, 17268185 - 17268384
Alignment:
Q  290 tatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttga 389  Q
    ||||||||||| ||||||||||| || || || |   |||| ||||| |  ||||| || |||||||||||| | || ||||  || |||||||||||||    
T  17268185 tatgcaatagctgcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgagaatcgttga 17268284  T
Q  390 agtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 489  Q
    ||||||| ||||||||||  ||||||||| | || | |||  | |||||  | ||||||||||| ||||||||| | || ||||||||||||||||||||    
T  17268285 agtaagccgggacagtaatgacagcattcataaccgatgattctagatattcctcagcaatctcccgcatctttgtgagtaccatagacgaaatttcctc 17268384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 377 - 526
Target Start/End: Original strand, 8667752 - 8667901
Alignment:
Q  377 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatag 476  Q
    |||||||| ||||||||||| || ||||||||||| |||||||| || |  || || ||||| || || |||| ||||||||||||| | ||||||||||    
T  8667752 tgagaatcattgaagtaagctggcacagtaacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccatag 8667851  T
Q  477 acgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaaca 526  Q
    | || ||||||||||||  ||| ||||| || | |||||| || ||||||    
T  8667852 aagatatttcctcagcacaaaagtgcttctcttgacccttgtacttaaca 8667901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 377 - 504
Target Start/End: Complemental strand, 8671465 - 8671338
Alignment:
Q  377 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatag 476  Q
    |||||||| ||||||||||| || || |||||||| |||||||| || | |||  | ||||| || || |||| ||||||||||||| | ||||||||||    
T  8671465 tgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcaccatag 8671366  T
Q  477 acgaaatttcctcagcagcaaattgctt 504  Q
    | || ||||||||||||  |||||||||    
T  8671365 aagatatttcctcagcacaaaattgctt 8671338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 489
Target Start/End: Complemental strand, 13333291 - 13333179
Alignment:
Q  377 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatag 476  Q
    |||||||| ||||||||||| || ||||||||||| |||||||| || | ||| || | ||| || || |||| ||||||||||||| | || |||||||    
T  13333291 tgagaatcattgaagtaagccggcacagtaacaacggcattcttgactggtgaccccatatatgcctctgcaacctctcgcatctttgtaaggaccatag 13333192  T
Q  477 acgaaatttcctc 489  Q
    | || ||||||||    
T  13333191 atgatatttcctc 13333179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 3147420 - 3147463
Alignment:
Q  200 gtaagaagagacacatcaaaagtcccacctcccaaatcaaagat 243  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||    
T  3147420 gtaagaagagacacatcaaaagtcccaccacccaagtcaaagat 3147463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 7877594 - 7877520
Alignment:
Q  351 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 425  Q
    ||||||||||||| || ||||  ||||||||||| ||||| ||||| || ||||||||||| |||||||| ||||    
T  7877594 caccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattcttgacag 7877520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 526
Target Start/End: Original strand, 8590926 - 8591120
Alignment:
Q  332 acattcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaac 431  Q
    |||||||| ||||| || |||||||||||||| || ||||  |  |||||||| || || ||||| || ||||||||||| |||||||| |||| |||      
T  8590926 acattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctggcacagtaacaactgcattcttgacaggtgact 8591025  T
Q  432 cgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaaca 526  Q
    | | | |   |||||||||||||||||||||| | || ||||| || || |||||||| |||  ||   |||| ||||||||||| || ||||||    
T  8591026 ccaaaaacttttcagcaatctctcgcatctttgtgagaaccatggatgagatttcctccgcacaaagacgcttttcctcacccttgtacttaaca 8591120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 417
Target Start/End: Original strand, 6789749 - 6789885
Alignment:
Q  281 tcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttgag 380  Q
    ||||| || ||||||| ||||||||| ||||| || || || ||||  | |||||| | |||||| ||  |||||||||||  ||| ||||  |||||||    
T  6789749 tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgag 6789848  T
Q  381 aatcgttgaagtaagcagggacagtaacaacagcatt 417  Q
    |||| ||||| |||||||| ||||||| ||| |||||    
T  6789849 aatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 526
Target Start/End: Original strand, 8602220 - 8602456
Alignment:
Q  290 tatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttga 389  Q
    ||||||| |||||| ||||||||||| || || || | ||  ||||| | |||||| ||  ||||||||||||| || ||||  || |||||||| || |    
T  8602220 tatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaa 8602319  T
Q  390 agtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 489  Q
    | ||||| || ||||||||||| |||||||| |||| |||  | ||| |    || ||||| || ||||||||| | || ||||| || || ||||||||    
T  8602320 aataagccggcacagtaacaactgcattcttgacaggtgactccagaaacttctctgcaatttcacgcatctttgtaaggaccattgatgagatttcctc 8602419  T
Q  490 agcagcaaattgcttgtcctcacccttatagttaaca 526  Q
    ||||   || ||||| ||| |||||||||| ||||||    
T  8602420 agcacagaagtgcttttccccacccttatacttaaca 8602456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 489
Target Start/End: Original strand, 17260538 - 17260686
Alignment:
Q  341 ccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataag 440  Q
    ||||| ||||||||||||||| | || ||||  || |||||||| ||||| |||||||| ||||||| |||| ||||  | || | |||  | |||||      
T  17260538 ccagcaataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacattaataaccgatgattcaagatata 17260637  T
Q  441 cttcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 489  Q
    | ||||||||||| |||||||| |  || ||||||||||| ||||||||    
T  17260638 cctcagcaatctcccgcatcttcacaagtaccatagacgagatttcctc 17260686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 29577729 - 29577641
Alignment:
Q  155 gtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaagat 243  Q
    |||||||||||||||||||| ||||||||| || | || | ||  || ||||||||||||||||| || ||||| || | |||||||||    
T  29577729 gtatcaccagcagtggcctttacttcaaaactatcatccttaagtgtgagaagagacacatcaaaggtgccaccaccaagatcaaagat 29577641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 540
Target Start/End: Original strand, 6789911 - 6790008
Alignment:
Q  443 tcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggctt 540  Q
    ||||||||||| ||||||||  | || | ||||||||||| ||||||| ||   | |||||| |||||||||||||| | |||| ||||||| |||||    
T  6789911 tcagcaatctcccgcatcttggtgaggatcatagacgaaacttcctcaacacatagttgcttctcctcacccttatactcaacaacaatcatgggctt 6790008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 8628631 - 8628716
Alignment:
Q  143 ccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacc 228  Q
    |||||||| || ||||  ||||||||||| ||||||||||| | | |  ||| ||| || || |||||||||||||||||||||||    
T  8628631 ccaccaaggtgagtatttccagcagtggctttaacttcaaagacatcacctttaattgtgaggagagacacatcaaaagtcccacc 8628716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 504
Target Start/End: Original strand, 8654757 - 8654910
Alignment:
Q  351 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaat 450  Q
    ||||||||||| | |||||||  || ||||| || |||||||| || || |||||||||||  |||| || || | ||| || || || || || |||||    
T  8654757 caccagcatctatggttgcttttcgctgagagtcattgaagtatgccggcacagtaacaacgacatttttgacgggtgatccaaggtatgcctctgcaat 8654856  T
Q  451 ctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgctt 504  Q
    ||||||||||||| | || |||  ||| || ||||||||||||  |||||||||    
T  8654857 ctctcgcatctttgtaagaaccgcagatgatatttcctcagcacaaaattgctt 8654910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 425
Target Start/End: Original strand, 3147569 - 3147653
Alignment:
Q  341 ccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 425  Q
    ||||| ||||||||||||||| | || ||||  || |||| ||| ||||| |||||||| || |||||||| |||||||| ||||    
T  3147569 ccagcaataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattcttgacag 3147653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 8659696 - 8659744
Alignment:
Q  377 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 425  Q
    |||||||| ||||| || ||||| || ||||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcacag 8659744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 143 - 582
Target Start/End: Original strand, 54396522 - 54396961
Alignment:
Q  143 ccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaaga 242  Q
    ||||||||||| |||||||||||||| || || ||||| || || || |||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |    
T  54396522 ccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaa 54396621  T
Q  243 tcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaacc 342  Q
    | | ||||||||  || ||    || |  || || || || | ||| || ||||| ||||||||||| ||||| |||||||| ||||| |||||||||||    
T  54396622 taagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacc 54396721  T
Q  343 agcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagct 442  Q
     |  ||| ||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |    ||| ||| |||||    
T  54396722 cgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagct 54396821  T
Q  443 tcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggctttt 542  Q
    |||||||  |||| |||||| || | |||||| || ||||||||||| || ||||||| ||| || ||||| || || |||||| | ||||| || ||||    
T  54396822 tcagcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggttttt 54396921  T
Q  543 caccaggaccagcaatgaccttaaaaggccatagcttcat 582  Q
    || | ||||| | || ||| ||||| |||||||| |||||    
T  54396922 cagcgggacctggaacgactttaaacggccatagtttcat 54396961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 155 - 573
Target Start/End: Complemental strand, 23596642 - 23596224
Alignment:
Q  155 gtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaagatcaacacgttct 254  Q
    ||||||||||| || || || || ||||| ||||| || |||||||||||||| || ||||||||||| ||||| || | ||| || || |  |||||||    
T  23596642 gtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttct 23596543  T
Q  255 tctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacacc 354  Q
    ||||||||  |||||| || || || |||||||| || |||||||| |||||||| |||||||||||||||||||  ||||| |  ||||  || |||||    
T  23596542 tctcaccagtacttgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacacc 23596443  T
Q  355 agcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctct 454  Q
    |||||| ||||| ||||||||||| |||||||||||||| ||||| || || ||||| |||||||| |  |||| ||| || ||||| || || |||||     
T  23596442 agcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctcc 23596343  T
Q  455 cgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccag 554  Q
      |||||| || || ||||| || || || || ||||||| ||||||||| |||||  |||| ||||| ||  | |||||||| || ||| |||| ||||    
T  23596342 ttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattggtttgtcagcagggccag 23596243  T
Q  555 caatgaccttaaaaggcca 573  Q
     ||||||||| || |||||    
T  23596242 gaatgaccttgaacggcca 23596224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 155 - 453
Target Start/End: Complemental strand, 23587790 - 23587492
Alignment:
Q  155 gtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaagatcaacacgttct 254  Q
    ||||||||||| || || || || ||||| ||||| || ||||||||||| || || ||||||||||| ||||| || | ||| || || |  |||||||    
T  23587790 gtatcaccagctgtagctttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttct 23587691  T
Q  255 tctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacacc 354  Q
    |||||||    ||||| || || || |||||||| || |||||||||||||| || || || |||||||||||||| ||||| |  ||||  || |||||    
T  23587690 tctcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacacc 23587591  T
Q  355 agcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctc 453  Q
     |||||||| || ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |  |||| ||| |||||||| || ||||||||    
T  23587590 ggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattcttaatcgttgtaccaagataagcctctgcaatctc 23587492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 429
Target Start/End: Original strand, 35132744 - 35132833
Alignment:
Q  340 accagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttga 429  Q
    |||||| ||| ||||||||||| |||| ||||  |||||||||||  | || |||||||| ||||||||||| |||||||| ||||||||    
T  35132744 accagcaatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattcttaacagttga 35132833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 526
Target Start/End: Complemental strand, 9335726 - 9335577
Alignment:
Q  377 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatag 476  Q
    |||||||| ||||||||||| || || |||||||| |||||||| || |  || || | ||| || || |||| ||||| ||||||| | |||| |||||    
T  9335726 tgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggcgaccccaaatatgcctccgcaacctctctcatctttgtaagcaacatag 9335627  T
Q  477 acgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaaca 526  Q
    | || ||||||||||||  ||| ||||| || | |||||| |||||||||    
T  9335626 aagatatttcctcagcacaaaagtgcttctcttgacccttgtagttaaca 9335577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 30775369 - 30775450
Alignment:
Q  161 ccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaaga 242  Q
    |||||||| || ||||||||||| | | | |||  ||| || |||||||||||||||||||||||||| || | ||||||||    
T  30775369 ccagcagttgctttaacttcaaacacatcatctctaatggtgagaagagacacatcaaaagtcccaccaccaagatcaaaga 30775450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 405
Target Start/End: Original strand, 30775489 - 30775613
Alignment:
Q  281 tcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttgag 380  Q
    ||||| || ||||||||||| || ||||| ||||| ||||| ||||||| |||||| | |||||| ||  ||||||||||  |||| ||||  || || |    
T  30775489 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtg 30775588  T
Q  381 aatcgttgaagtaagcagggacagt 405  Q
     ||| ||||| |||||||| |||||    
T  30775589 catcattgaaataagcaggcacagt 30775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 31426290 - 31426442
Alignment:
Q  1 taataaaggtttccccttctccaaaataaacaccttaaatacacttagtcctttgtaaccaaaaa----------gttagttagttagttattttgagtg 90  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||    
T  31426290 taataaaggtttccccttgtccaaaataaacaccttaaatacacttagtcctttgtaaccaaaaaaatttaatgagttagttagttagttattttgagtg 31426389  T
Q  91 ttcctcctattttttctacttgatagttatccaatcagttagaataatctacc 143  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31426390 ttcctcctattttttctacttgatagttatccaatcagttagaagaatctacc 31426442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 28776805 - 28776866
Alignment:
Q  225 cacctcccaaatcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaaga 286  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| ||| | ||||||| ||||    
T  28776805 cacctcccaaatcaaagatcaacaaattcttctcaccaatactcgtcacttttttgtgaaga 28776866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 190 - 589
Target Start/End: Complemental strand, 17716709 - 17716316
Alignment:
Q  190 ctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccg 289  Q
    |||||||||||| || | ||| ||||||||||| ||||| || |  ||||||||||| || |||||||| ||||| || ||||      |||||| |||     
T  17716709 ctcttcaatagttagcaaagagacatcaaaagtaccaccaccaaggtcaaagatcaagacattcttctctccaacgctggtcg------tgtcaaaacca 17716616  T
Q  290 tatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttga 389  Q
    || ||||| || |||||||| ||||| |||||||||||||  | ||| | |||||| ||| |||||||||  ||||| ||||| |  ||||||   || |    
T  17716615 taagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaaaattaa 17716516  T
Q  390 agtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 489  Q
    |||||||||||||||||||||| |||||||| |  |  || || || || || ||||||| ||| ||||||||  | || ||||| || || || || ||    
T  17716515 agtaagcagggacagtaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttc 17716416  T
Q  490 agcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 589  Q
     || |||||||||||  | | |||  | ||||||||||||||||||||||||||| | || |||| ||| | |||||||||||| | |||||| ||||||    
T  17716415 tgcggcaaattgcttaactttaccactgtagttaacaccaatcattggcttttcatccgggccagaaattatcttaaaaggccacaacttcatatcactc 17716316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 377 - 587
Target Start/End: Complemental strand, 17717789 - 17717579
Alignment:
Q  377 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatag 476  Q
    |||||||| || ||||||||||||||||||||||| |||||| | |  || ||||| |  || || || |||||||| ||||||||    || ||||| |    
T  17717789 tgagaatcattaaagtaagcagggacagtaacaacggcattcctaatggtagaaccaaagtaggcctctgcaatctcacgcatcttccagagtaccatgg 17717690  T
Q  477 acgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatag 576  Q
    | || || || || |||||||||||||| || ||||| || ||||| |||||||||||||||||||||||  | |||| ||| | |||||||||||| |     
T  17717689 aagagatctcttctgcagcaaattgcttatcttcaccattgtagtttacaccaatcattggcttttcacccaggccagaaattatcttaaaaggccacaa 17717590  T
Q  577 cttcatctcac 587  Q
    |||||| ||||    
T  17717589 cttcatatcac 17717579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 16657451 - 16657304
Alignment:
Q  278 ttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgtt 377  Q
    ||||||||||| ||||||||||| |||||||| || || || |||||||  |  ||||| |  ||||||||  ||||||||||| | || ||||  || |    
T  16657451 ttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcgct 16657352  T
Q  378 gagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 425  Q
    | ||||| ||||||||||| || |||||||||||||||||||| ||||    
T  16657351 gcgaatcattgaagtaagctggcacagtaacaacagcattcttgacag 16657304  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 589
Target Start/End: Complemental strand, 17647858 - 17647658
Alignment:
Q  389 aagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcct 488  Q
    ||||||||||||| |||||||||||||| ||| |  |  || || || || || ||||||| |||||| ||||| || || ||||| |  || || || |    
T  17647858 aagtaagcagggaaagtaacaacagcatccttaatggcagagccaaggtaggcctcagcaacctctcgaatcttcatgagtaccatggcagagatctctt 17647759  T
Q  489 cagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttca-ccaggaccagcaatgaccttaaaaggccatagcttcatctcac 587  Q
    | || ||||||||||| || ||||| || ||||||||| ||||||||||||||||| ||||| |||| ||| | |||||||||||| | |||||| ||||    
T  17647758 ctgcggcaaattgcttatcttcaccattgtagttaacaacaatcattggcttttcatccagg-ccagaaattatcttaaaaggccacaacttcatatcac 17647660  T
Q  588 tc 589  Q
    ||    
T  17647659 tc 17647658  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 12234986 - 12235065
Alignment:
Q  341 ccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattctt 420  Q
    ||||| || |||||||||||| |||||||||  ||||||||||| ||||| |||||||| || |||||||| ||||||||    
T  12234986 ccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 589
Target Start/End: Complemental strand, 17703770 - 17703672
Alignment:
Q  491 gcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 589  Q
    |||| ||||||||| || ||||| || ||||||||||||||||||||||| ||| | || |||| ||| | |||||||||||| | |||||| ||||||    
T  17703770 gcagtaaattgcttatcttcaccattgtagttaacaccaatcattggcttatcatccgggccagaaataatcttaaaaggccacaacttcatatcactc 17703672  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 477
Target Start/End: Complemental strand, 12245265 - 12245141
Alignment:
Q  353 ccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatct 452  Q
    ||||||||| | |||||||  || ||||||||  | || |||||||| |||||||||||||||||||| || | |||  | | ||| || |||||||| |    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctttaccggtgattctaaatatgcctcagcaattt 12245166  T
Q  453 ctcgcatctttattagcaccataga 477  Q
    ||||||||||| |||| ||||||||    
T  12245165 ctcgcatctttgttagtaccataga 12245141  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 477
Target Start/End: Original strand, 7542533 - 7542659
Alignment:
Q  351 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaat 450  Q
    |||| |||||| |||| ||||  ||||||||||| || || |||||||| ||||||||||| |||||| |||||||||   | | ||| |  ||||||||    
T  7542533 cacccgcatctatagtggcttttcgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcacagttgtttctaaatacgactcagcaat 7542632  T
Q  451 ctctcgcatctttattagcaccataga 477  Q
     |||||||||||| | || ||||||||    
T  7542633 ttctcgcatctttgtgagtaccataga 7542659  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 589
Target Start/End: Complemental strand, 17666405 - 17666312
Alignment:
Q  496 aaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 589  Q
    ||||||||| || |||||||| ||||||||||||||||| |||||||||   || |||| ||| | |||||| ||||| | |||||| ||||||    
T  17666405 aaattgcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatatcactc 17666312  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 418
Target Start/End: Complemental strand, 17703919 - 17703843
Alignment:
Q  342 cagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattc 418  Q
    |||| |||||| ||||||| ||||| ||||| |  |||||||  || |||||| |||||||||||||||||||||||    
T  17703919 cagcaataacagcagcatccttagtagcttgtctctgagaattattaaagtaaacagggacagtaacaacagcattc 17703843  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 17719821 - 17719774
Alignment:
Q  497 aattgcttgtcctcacccttatagttaacaccaatcattggcttttca 544  Q
    |||||||| || | |||||| |||||||||||||||||||||||||||    
T  17719821 aattgcttatcattacccttgtagttaacaccaatcattggcttttca 17719774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 17621786 - 17621745
Alignment:
Q  377 tgagaatcgttgaagtaagcagggacagtaacaacagcattc 418  Q
    |||||||| || |||||| |||||||||||||||||||||||    
T  17621786 tgagaatcattaaagtaaacagggacagtaacaacagcattc 17621745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 498
Target Start/End: Original strand, 11133228 - 11133448
Alignment:
Q  278 ttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgtt 377  Q
    ||||||||||| |||||||| ||||| || || |||||||| || |||| || ||| || | ||| || |||||||| |||||| |||| ||||| ||||    
T  11133228 ttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgtt 11133327  T
Q  378 gagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccataga 477  Q
    | || || || ||||||||||| ||||| | |||  ||| |||||| ||||| || || ||| |||| |||||||| || || ||| | |  ||||| ||    
T  11133328 gcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatttttgtcaataccattga 11133427  T
Q  478 cgaaatttcctcagcagcaaa 498  Q
     || |||||||||||||||||    
T  11133428 tgatatttcctcagcagcaaa 11133448  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 534
Target Start/End: Original strand, 11196958 - 11197213
Alignment:
Q  279 tgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttg 378  Q
    |||||||||| |||||||| ||||| ||||  ||||| || || |||| || |||||| |  ||||| |||||||| ||||||  ||| |  || |||||    
T  11196958 tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttg 11197057  T
Q  379 agaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagac 478  Q
     || || || ||||||||||| ||||| | |||| ||| |||||| ||||| || || ||||||||||| |||||   ||| |||   |  ||||| ||     
T  11197058 tgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgat 11197157  T
Q  479 gaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcat 534  Q
    || ||||| ||||||||||| ||||| |||||  | |||||||||||| |||||||    
T  11197158 gagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcat 11197213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 279 - 534
Target Start/End: Original strand, 11156505 - 11156760
Alignment:
Q  279 tgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttg 378  Q
    |||||||||| |||||||| ||||| ||||  ||||| || || |||| || |||||| |  ||||| |||||||| |||||||  || |  || |||||    
T  11156505 tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttg 11156604  T
Q  379 agaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagac 478  Q
     || || || ||||||||||| ||||| | |||| ||| |||||| ||||| || || ||| ||||||| |||||   ||| |||   |  ||||| ||     
T  11156605 tgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcggccatttttgccaataccatcgat 11156704  T
Q  479 gaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcat 534  Q
    || ||||| ||||||||||| ||||| |||||  | |||||||||||| |||||||    
T  11156705 gagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcat 11156760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 534
Target Start/End: Original strand, 11200123 - 11200382
Alignment:
Q  279 tgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttg----ac 374  Q
    |||||||||| |||||||| ||||| ||||  ||||| || || |||| ||||||||| |  ||||| ||| |||| ||||||  ||| |  ||    ||    
T  11200123 tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtac 11200222  T
Q  375 gttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccat 474  Q
    |||| ||||| || ||||| | ||| ||| | | |||| ||| |||||| ||||| || || ||||||||||||||||| | ||| ||| | |  |||||    
T  11200223 gttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccat 11200322  T
Q  475 agacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcat 534  Q
     || || ||||| || |||||||| ||||| |||||  | |||||||||||| |||||||    
T  11200323 ggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcat 11200382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 534
Target Start/End: Original strand, 11161514 - 11161639
Alignment:
Q  409 aacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcc 508  Q
    |||| ||| |||||| ||||| || || ||||||||||||||||| | ||| ||| | |  ||||| || || ||||| || |||||||| ||||| |||    
T  11161514 aacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcc 11161613  T
Q  509 tcacccttatagttaacaccaatcat 534  Q
    ||  | |||||||||||| |||||||    
T  11161614 tcgtcattatagttaacaacaatcat 11161639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 4678419 - 4678345
Alignment:
Q  351 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 425  Q
    ||||||||||| | || ||||  ||||||||||| |||||||| ||||| |||||||||||  ||||||||||||    
T  4678419 caccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcacag 4678345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 19229830 - 19229769
Alignment:
Q  225 cacctcccaaatcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaaga 286  Q
    ||||||||| ||||||||||||||  ||||||||||||| ||| ||| | ||||||| ||||    
T  19229830 cacctcccatatcaaagatcaacaaattcttctcaccaatactcgtcacttttttgtgaaga 19229769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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