View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4382_high_4 (Length: 345)
Name: NF4382_high_4
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4382_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 157 - 345
Target Start/End: Complemental strand, 31426488 - 31426290
Alignment:
| Q |
157 |
aaatttggcggttcagttgcttggttctctagcttgactttgactaggtagattcttctaactgattggataactatcaagtagaaaaaataggaggaac |
256 |
Q |
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| T |
31426488 |
aaatttggcggttcagttgcttggttttctagcttgactttgactaggtagattcttctaactgattggataactatcaagtagaaaaaataggaggaac |
31426389 |
T |
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| Q |
257 |
actcaaaataactaactaactaac----------tttttggttacaaaggactaagtgtatttaaggtgtttattttggagaaggggaaacctttatta |
345 |
Q |
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| T |
31426388 |
actcaaaataactaactaactaactcattaaatttttttggttacaaaggactaagtgtatttaaggtgtttattttggacaaggggaaacctttatta |
31426290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 31426668 - 31426518
Alignment:
| Q |
14 |
agaagaaaggttttcacgtgcaaaactgatcaaagaaaaagaagaaatattgaaggttatggcataagaattgtgaataatgtggaagattataacaact |
113 |
Q |
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| T |
31426668 |
agaagaaaggttttcacgtgcaaaactgatcaaagaaaaagaagaaatattgaaggttatggcacaagaattgtgaataatgtgggagattataacaact |
31426569 |
T |
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| Q |
114 |
tgcaagaaatgaaaatggaatggaagaagnnnnnnngagagtgaaatttgg |
164 |
Q |
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| T |
31426568 |
tgcaagaaatgaaaatggaatggaagaagaaaaaaagagagtgaaatttgg |
31426518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 7171622 - 7171510
Alignment:
| Q |
26 |
ttcacgtgcaaaactgatcaaagaaaaagaagaaatattgaaggttatggcataagaattgtgaataatgtggaagattataacaacttgcaagaaatga |
125 |
Q |
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| T |
7171622 |
ttcacgtgcaaaactgatcaaagaaatagaagaaatattgaaggt---ggtagaagaattgtgaataatgtgggggattataacaacttgcaagaaatga |
7171526 |
T |
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| Q |
126 |
aaatggaatggaagaa |
141 |
Q |
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| T |
7171525 |
aaatggaatggaagaa |
7171510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 7171456 - 7171381
Alignment:
| Q |
156 |
gaaatttggcggttcagttgcttggttctctagcttgactttgactaggtagattcttctaactgattggataact |
231 |
Q |
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||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7171456 |
gaaatgtggcggttcagctgcttggttttctagcttgaccttgactaggtagattcttctaactgattggataact |
7171381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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