View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4382_high_6 (Length: 317)

Name: NF4382_high_6
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4382_high_6
NF4382_high_6
[»] chr1 (1 HSPs)
chr1 (2-295)||(48983101-48983390)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 48983101 - 48983390
Alignment:
Q  2 atttgtaaaccgtacttagtcaagttccatcacctggtggcaatggcattcattttgggagctgagacatagttcacttaattaattaacacgcttttgg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48983101 atttgtaaaccgtacttagtcaagttccatcacctggtggcaatggcattcattttgggagctgagacatagttcacttaattaattaacacgcttttgg 48983200  T
Q  102 taaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgatgttgtagagatgacttgtgagggtgaggcagtgtcactcactc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||    
T  48983201 taaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgatgttgtagagatgacttgtgagggtgaggcattg----tcactc 48983296  T
Q  202 agtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcgtgcacacgacttgtcttttcatcacctatgctatgtt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48983297 agtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcgcgcacacgacttgtcttttcatcacctatgctatgtt 48983390  T

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