View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4382_high_8 (Length: 307)

Name: NF4382_high_8
Description: NF4382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4382_high_8
NF4382_high_8
[»] chr3 (9 HSPs)
chr3 (1-178)||(44792917-44793093)
chr3 (3-127)||(44797855-44797979)
chr3 (45-127)||(44801250-44801332)
chr3 (38-133)||(44789413-44789509)
chr3 (210-264)||(3792424-3792478)
chr3 (26-127)||(44805742-44805843)
chr3 (210-264)||(3830604-3830658)
chr3 (3-143)||(44787134-44787274)
chr3 (86-128)||(44784308-44784350)
[»] chr5 (1 HSPs)
chr5 (176-264)||(11888100-11888188)
[»] scaffold0141 (1 HSPs)
scaffold0141 (176-264)||(16453-16541)
[»] chr7 (1 HSPs)
chr7 (176-264)||(8425109-8425197)
[»] chr1 (1 HSPs)
chr1 (176-264)||(52242804-52242892)
[»] chr4 (2 HSPs)
chr4 (206-264)||(7362055-7362113)
chr4 (187-264)||(48229494-48229571)
[»] scaffold0267 (1 HSPs)
scaffold0267 (210-264)||(7366-7420)
[»] chr2 (1 HSPs)
chr2 (212-264)||(13698224-13698276)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 44793093 - 44792917
Alignment:
Q  1 atggtagacgatgaattgcctcaggagtttttggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctcaatga 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44793093 atggtagacgatgaattgcctcaggagtttctggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgtcgtcttctcaatga 44792994  T
Q  101 acatacctccacgtttactcgttcgtatcctacactattcatcatcttctttttgtttttagaccaatattaactaat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  44792993 acatacctccacgtttactcgttcgtatcctacactattcatcatcttctttttgttttt-taccaatattaactaat 44792917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 44797979 - 44797855
Alignment:
Q  3 ggtagacgatgaattgcctcaggagtttttggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctcaatgaac 102  Q
    |||||| |||||||| ||||   |||||||| ||||||||| |||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  44797979 ggtagatgatgaatttcctccaaagtttttgcaacatctaatcttgcgcgccctgcgattggatctcattgaacctggtcgtgtcgtcttctcaatgaac 44797880  T
Q  103 atacctccacgtttactcgttcgta 127  Q
    ||||| |||||||||||||||||||    
T  44797879 atacccccacgtttactcgttcgta 44797855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 44801332 - 44801250
Alignment:
Q  45 cttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctcaatgaacatacctccacgtttactcgttcgta 127  Q
    |||||| |||||||||||||||| |||||| ||||| | ||| || |||||||||||||||||||||||||||||||||||||    
T  44801332 cttgcgtggcctacgattggatctcattgagcctggccatgtcgttttctcaatgaacatacctccacgtttactcgttcgta 44801250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 44789509 - 44789413
Alignment:
Q  38 atctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctc-aatgaacatacctccacgtttactcgttcgtatcctac 133  Q
    |||||| |||||| |||||||||||||||| |||| | |||||||||||  ||||||| ||||| ||||||  ||||||||||||||||||||||||    
T  44789509 atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaaatgagcataccctcacgtttactcgttcgtatcctac 44789413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 3792478 - 3792424
Alignment:
Q  210 gttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  3792478 gttgctgttataggctagaattctgatatgcttatgtttgttttgctttagtttg 3792424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 44805843 - 44805742
Alignment:
Q  26 agtttttggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctcaatgaacatacctccacgtttactcgttcg 125  Q
    ||||| |||||||||||| |||||| |||||||| || |||  |||||| ||||| |||||  | ||| ||||||||||||| |||||||||||||||||    
T  44805843 agtttctggaacatctaatcttgcgtggcctacgcttcgatgtcattgagcctggccgtgtcattttcacaatgaacatacccccacgtttactcgttcg 44805744  T
Q  126 ta 127  Q
    ||    
T  44805743 ta 44805742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 3830658 - 3830604
Alignment:
Q  210 gttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  3830658 gttgctgttataggctagaattcttatatgcttttgtttgttttgctttagtttg 3830604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 44787274 - 44787134
Alignment:
Q  3 ggtagacgatgaattgcctcaggagtttttggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctcaatgaac 102  Q
    ||||||| |||||||||||||||||||||||| |||||||  | | || ||| ||||  | |||| |||||| ||||| ||| | || |||||||||||     
T  44787274 ggtagacaatgaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaag 44787175  T
Q  103 atacctccacgtttactcgttcgtatcctacactattcatc 143  Q
    ||||||||   |||||| ||||||||| ||| || ||||||    
T  44787174 atacctcccaatttacttgttcgtatcttactcttttcatc 44787134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 44784350 - 44784308
Alignment:
Q  86 ttgtcttctcaatgaacatacctccacgtttactcgttcgtat 128  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  44784350 ttgtcttctcaatgaagatacctccacgtttactcgttcgtat 44784308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 11888188 - 11888100
Alignment:
Q  176 aatatttgtagaagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    |||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11888188 aatatttgtagaagtacatccgaagcttataaaagtttctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 11888100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 16541 - 16453
Alignment:
Q  176 aatatttgtagaagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16541 aatatttgtagaagtacatccaaagcttataaaagtttttgttataggctagaattctaatatgcttctgtttgttttgccttagtttg 16453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 8425109 - 8425197
Alignment:
Q  176 aatatttgtagaagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8425109 aatatttgtagaagtacatccaaagcttataaaagtttttgttataggctagaattctaatatgcttctgtttgttttgccttagtttg 8425197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 52242892 - 52242804
Alignment:
Q  176 aatatttgtagaagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    |||||||||||||||| ||||||| ||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  52242892 aatatttgtagaagtacatccaaaacttataaaagtttctgttatagactagaattctaatatgcttctgtttgttttgccttagtttg 52242804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 7362113 - 7362055
Alignment:
Q  206 aatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7362113 aatagttgctgttgtaggctagaattctaatatgcttatgtttgttttgccttagtttg 7362055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 48229494 - 48229571
Alignment:
Q  187 aagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    ||||||||||||||||| | |||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  48229494 aagtatatccaaagcttttgatagttactgttataggctagaattctaatttgcttctgcttgttttgccttagtttg 48229571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 7420 - 7366
Alignment:
Q  210 gttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  7420 gttgttgttataggctagaattcttatatgcttttgtttgttttgctttagtttg 7366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 13698224 - 13698276
Alignment:
Q  212 tgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 264  Q
    |||| ||||||||||||||| | |||||||| |||||||||||| ||||||||    
T  13698224 tgctcttataggctagaattttgatatgcttttgtttgttttgctttagtttg 13698276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University