View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4383-Insertion-10 (Length: 580)

Name: NF4383-Insertion-10
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4383-Insertion-10
NF4383-Insertion-10
[»] chr7 (1 HSPs)
chr7 (8-580)||(42340850-42341422)
[»] chr8 (1 HSPs)
chr8 (86-129)||(16811243-16811286)


Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Complemental strand, 42341422 - 42340850
Alignment:
8 cggtgagatgacactgctgctgcggtaggtggtggtgctatggcaaccggcataccagactgtcgttccctaactacccctgctttaaccaagaaatcct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
42341422 cggtgagatgacactgctgctgcggtaggtggtggtgctatggcaaccggcataccagactgttgttccctaactacccctgctttaaccaagaaatcct 42341323  T
108 ccaatgtcatctcgccaaaagtcggctgtcgaggggtagactcggtattctgagcaacattgttgatgttgtgatggttctgttgttctttgtgtatctc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42341322 ccaatgtcatctcgccaaaagtcggctgtcgaggggtagactcggtattctgagcaacattgttgatgttgtgatggttctgttgttctttgtgtatctc 42341223  T
208 agaccaaacttgttccacagttttcctgcagagaggagcaggaatcgataacgaattttggcgaggaagacttgcctgtttgctaatccctttctgagct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42341222 agaccaaacttgttccacagttttcctgcagagaggagcaggaatcgataacgaattttggcgaggaagacttgcctgtttgctaatccctttctgagct 42341123  T
308 gcagacaagttattgttgttgctgttattattgttggatgcagcttgttgttggttttcttctgcattccaaatactacttagaaactcatccatgttca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42341122 gcagacaagttattgttgttgctgttattattgttggatgcagcttgttgttggttttcttctgcattccaaatactacttagaaactcatccatgttca 42341023  T
408 tggatccgaaattcttgccgctatcacagaggctgtgttggaactcgtcaagggtgagtgagtatatggatgacgattgccttccgagcgatgaagaaat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
42341022 tggatccgaaattcttgccgctatcacagaggctgtgttggaactcgtcgagggtgagtgagtatatggatgaagattgccttccgagcgatgaagaaat 42340923  T
508 gacattgttgacgtcattcctggtcgcttcttctccttccctctgcaatgattctacctccccttgttgccaa 580  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
42340922 gacattgttgacgtcattcctgatcgcttcttctccttccctttgcaatgattctacctccccttgttgccaa 42340850  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 16811286 - 16811243
Alignment:
86 cctgctttaaccaagaaatcctccaatgtcatctcgccaaaagt 129  Q
    |||||||| |||||||||||||||||||||||||| || |||||    
16811286 cctgctttcaccaagaaatcctccaatgtcatctctcctaaagt 16811243  T

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