View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4383-Insertion-10 (Length: 580)
Name: NF4383-Insertion-10
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4383-Insertion-10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Complemental strand, 42341422 - 42340850
Alignment:
| Q |
8 |
cggtgagatgacactgctgctgcggtaggtggtggtgctatggcaaccggcataccagactgtcgttccctaactacccctgctttaaccaagaaatcct |
107 |
Q |
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| T |
42341422 |
cggtgagatgacactgctgctgcggtaggtggtggtgctatggcaaccggcataccagactgttgttccctaactacccctgctttaaccaagaaatcct |
42341323 |
T |
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| Q |
108 |
ccaatgtcatctcgccaaaagtcggctgtcgaggggtagactcggtattctgagcaacattgttgatgttgtgatggttctgttgttctttgtgtatctc |
207 |
Q |
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| T |
42341322 |
ccaatgtcatctcgccaaaagtcggctgtcgaggggtagactcggtattctgagcaacattgttgatgttgtgatggttctgttgttctttgtgtatctc |
42341223 |
T |
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| Q |
208 |
agaccaaacttgttccacagttttcctgcagagaggagcaggaatcgataacgaattttggcgaggaagacttgcctgtttgctaatccctttctgagct |
307 |
Q |
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| T |
42341222 |
agaccaaacttgttccacagttttcctgcagagaggagcaggaatcgataacgaattttggcgaggaagacttgcctgtttgctaatccctttctgagct |
42341123 |
T |
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| Q |
308 |
gcagacaagttattgttgttgctgttattattgttggatgcagcttgttgttggttttcttctgcattccaaatactacttagaaactcatccatgttca |
407 |
Q |
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| T |
42341122 |
gcagacaagttattgttgttgctgttattattgttggatgcagcttgttgttggttttcttctgcattccaaatactacttagaaactcatccatgttca |
42341023 |
T |
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| Q |
408 |
tggatccgaaattcttgccgctatcacagaggctgtgttggaactcgtcaagggtgagtgagtatatggatgacgattgccttccgagcgatgaagaaat |
507 |
Q |
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| T |
42341022 |
tggatccgaaattcttgccgctatcacagaggctgtgttggaactcgtcgagggtgagtgagtatatggatgaagattgccttccgagcgatgaagaaat |
42340923 |
T |
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| Q |
508 |
gacattgttgacgtcattcctggtcgcttcttctccttccctctgcaatgattctacctccccttgttgccaa |
580 |
Q |
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| T |
42340922 |
gacattgttgacgtcattcctgatcgcttcttctccttccctttgcaatgattctacctccccttgttgccaa |
42340850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 16811286 - 16811243
Alignment:
| Q |
86 |
cctgctttaaccaagaaatcctccaatgtcatctcgccaaaagt |
129 |
Q |
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| T |
16811286 |
cctgctttcaccaagaaatcctccaatgtcatctctcctaaagt |
16811243 |
T |
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