View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4383-Insertion-2 (Length: 1081)
Name: NF4383-Insertion-2
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4383-Insertion-2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 24527304 - 24527008
Alignment:
| Q |
8 |
ggtacaaaatacaattacaagaagcaatgcnnnnnnntcaagaccaaggtcatgtcaaaaacaagctaaaaccaaaccaactcataacatactatcaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24527304 |
ggtacaaaatacaattacaagaagcaatgcaaaaaaatcaagaccaaggtcatgtcaaaaacaagctaaaaccaaaccaactcataacatactatcaaaa |
24527205 |
T |
|
| Q |
108 |
agaataaagcgaaatagctaaggaccccaaagatattgataaaattcaaccttaaatcctttctcatttattttcagtcaccaccatgacaacaatttat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24527204 |
agaataaagcgaaatagctaaggaccccaaagatattgataaaattcaaccttaaatcctttctcatttattttcagtcaccaccatgataacaatttat |
24527105 |
T |
|
| Q |
208 |
tagattttaaaatatttttgttgaaagatatttgcattttgaacttttcaaatagcccacagacaagtcatttgaaccgcttgcaacaatttataat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24527104 |
tagattttaaaatatttttgttgaaagatatttgcattttgaacttttcaaatagcccacagacaagtcatttgaaccgcttgcaacaatttataat |
24527008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 518 - 850
Target Start/End: Complemental strand, 24526755 - 24526439
Alignment:
| Q |
518 |
tcaagtgcagggtgaagctatgcatgtgggtagttttggctacccatcaat---ggagaagagtcaaaatctagtactaagtgtgagggaatgtggccct |
614 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24526755 |
tcaagtgcagggtgaagctatgcatgtggctagttttggctacccatcaatattggagaagagtcaaaatctagtactaagtgtgagggaatgtggccct |
24526656 |
T |
|
| Q |
615 |
ttcctccctccaaaacaaaaaataatattttt-catcatttctataaaagatagttaatcaaatacacggtattttgcctcaactttcgatatcttttcc |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
24526655 |
ttcctccctccaaaacaaaaaataatatttttccatcatttctataaaagaaagttaatcaaatatacggtattttgcctcaa----------------- |
24526573 |
T |
|
| Q |
714 |
ctctccactcaagattttagcaaaaa-tatataagg-ttagatggatttgggagagcttttgaatgtgagagaaagccatgtcnnnnnnnaattgatttc |
811 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| | |||||||| |
|
|
| T |
24526572 |
----ccactcaagattttagcaaaaattatataaggtttagatgggtttgggagagcttttgaatgtgagagaaagacatgtc-ttttttatttgatttc |
24526478 |
T |
|
| Q |
812 |
tagtttgaagaggttttagaacctttcaaaaacccttcc |
850 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
24526477 |
tagtttgaagagtttttagaacctctcaaaaacccttcc |
24526439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 370 - 517
Target Start/End: Complemental strand, 24526942 - 24526794
Alignment:
| Q |
370 |
ttacacgaaacttagaactcccttcaatataggtatagaccataatcttttctaccccctcaatagatatctatacctatatatgaagagttgggtataa |
469 |
Q |
| |
|
|||||| |||||||| | ||||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24526942 |
ttacactaaacttagtattcccttcaatataggcatagaccgttatcttttttaccccctcaatagatatctatacctatatatgaagagttgggtataa |
24526843 |
T |
|
| Q |
470 |
aataaaaacaa-gttgttaatccaagttgtttaccctctcaatacattg |
517 |
Q |
| |
|
|| |||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24526842 |
aacaaaaacaaggttgttaatccaagtcgtttaccctctcaatacattg |
24526794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 881 - 975
Target Start/End: Complemental strand, 24526434 - 24526340
Alignment:
| Q |
881 |
aaataaacttttacaaaatgggggagtatcccttttttattctcattcctcttccatttccctccaaatccattcgctctcttaaaatctttttt |
975 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24526434 |
aaataaacttaaacaaagtgggggactatcccttttttattctcattcctcttccatttccctccaaatccattcgctctcttaaaatccttttt |
24526340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 16904005 - 16904066
Alignment:
| Q |
162 |
aatcctttctcatttattttcagtcaccaccatgacaacaatttattagattttaaaatatt |
223 |
Q |
| |
|
|||||||| |||||||||| || ||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
16904005 |
aatcctttgacatttattttgagccaccatcataacaacaatttaatagattttaaaatatt |
16904066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University