View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4383-Insertion-2 (Length: 1081)

Name: NF4383-Insertion-2
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4383-Insertion-2
NF4383-Insertion-2
[»] chr3 (4 HSPs)
chr3 (8-304)||(24527008-24527304)
chr3 (518-850)||(24526439-24526755)
chr3 (370-517)||(24526794-24526942)
chr3 (881-975)||(24526340-24526434)
[»] chr1 (1 HSPs)
chr1 (162-223)||(16904005-16904066)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 24527304 - 24527008
Alignment:
8 ggtacaaaatacaattacaagaagcaatgcnnnnnnntcaagaccaaggtcatgtcaaaaacaagctaaaaccaaaccaactcataacatactatcaaaa 107  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24527304 ggtacaaaatacaattacaagaagcaatgcaaaaaaatcaagaccaaggtcatgtcaaaaacaagctaaaaccaaaccaactcataacatactatcaaaa 24527205  T
108 agaataaagcgaaatagctaaggaccccaaagatattgataaaattcaaccttaaatcctttctcatttattttcagtcaccaccatgacaacaatttat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
24527204 agaataaagcgaaatagctaaggaccccaaagatattgataaaattcaaccttaaatcctttctcatttattttcagtcaccaccatgataacaatttat 24527105  T
208 tagattttaaaatatttttgttgaaagatatttgcattttgaacttttcaaatagcccacagacaagtcatttgaaccgcttgcaacaatttataat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24527104 tagattttaaaatatttttgttgaaagatatttgcattttgaacttttcaaatagcccacagacaagtcatttgaaccgcttgcaacaatttataat 24527008  T

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Target: chr3; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 518 - 850
Target Start/End: Complemental strand, 24526755 - 24526439
Alignment:
518 tcaagtgcagggtgaagctatgcatgtgggtagttttggctacccatcaat---ggagaagagtcaaaatctagtactaagtgtgagggaatgtggccct 614  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
24526755 tcaagtgcagggtgaagctatgcatgtggctagttttggctacccatcaatattggagaagagtcaaaatctagtactaagtgtgagggaatgtggccct 24526656  T
615 ttcctccctccaaaacaaaaaataatattttt-catcatttctataaaagatagttaatcaaatacacggtattttgcctcaactttcgatatcttttcc 713  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||                     
24526655 ttcctccctccaaaacaaaaaataatatttttccatcatttctataaaagaaagttaatcaaatatacggtattttgcctcaa----------------- 24526573  T
714 ctctccactcaagattttagcaaaaa-tatataagg-ttagatggatttgggagagcttttgaatgtgagagaaagccatgtcnnnnnnnaattgatttc 811  Q
        |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||       | ||||||||    
24526572 ----ccactcaagattttagcaaaaattatataaggtttagatgggtttgggagagcttttgaatgtgagagaaagacatgtc-ttttttatttgatttc 24526478  T
812 tagtttgaagaggttttagaacctttcaaaaacccttcc 850  Q
    |||||||||||| ||||||||||| ||||||||||||||    
24526477 tagtttgaagagtttttagaacctctcaaaaacccttcc 24526439  T

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Target: chr3; HSP #3
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 370 - 517
Target Start/End: Complemental strand, 24526942 - 24526794
Alignment:
370 ttacacgaaacttagaactcccttcaatataggtatagaccataatcttttctaccccctcaatagatatctatacctatatatgaagagttgggtataa 469  Q
    |||||| |||||||| | ||||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
24526942 ttacactaaacttagtattcccttcaatataggcatagaccgttatcttttttaccccctcaatagatatctatacctatatatgaagagttgggtataa 24526843  T
470 aataaaaacaa-gttgttaatccaagttgtttaccctctcaatacattg 517  Q
    || |||||||| ||||||||||||||| |||||||||||||||||||||    
24526842 aacaaaaacaaggttgttaatccaagtcgtttaccctctcaatacattg 24526794  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 881 - 975
Target Start/End: Complemental strand, 24526434 - 24526340
Alignment:
881 aaataaacttttacaaaatgggggagtatcccttttttattctcattcctcttccatttccctccaaatccattcgctctcttaaaatctttttt 975  Q
    ||||||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
24526434 aaataaacttaaacaaagtgggggactatcccttttttattctcattcctcttccatttccctccaaatccattcgctctcttaaaatccttttt 24526340  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 16904005 - 16904066
Alignment:
162 aatcctttctcatttattttcagtcaccaccatgacaacaatttattagattttaaaatatt 223  Q
    ||||||||  |||||||||| || ||||| ||| ||||||||||| ||||||||||||||||    
16904005 aatcctttgacatttattttgagccaccatcataacaacaatttaatagattttaaaatatt 16904066  T

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