View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4383-Insertion-6 (Length: 901)
Name: NF4383-Insertion-6
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4383-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 7 - 529
Target Start/End: Complemental strand, 2907391 - 2906864
Alignment:
| Q |
7 |
aaaactagcatggaaaattaagataaggagcttgtgaataaaa-gccaatacaatgatacaaacattgaatatcgaacatagagattaacataacacac- |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
2907391 |
aaaactagcatggaaaattaagataaggagcttgtgaataaaaagtcaatacaatgatacaaacattgaatatcaaacatagagataaacataacacact |
2907292 |
T |
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| Q |
105 |
---actcacacatttttcttcaatgagtacaaattaaaatgaaactacattgatggtacaaagagttcagaatagtttagcgtcttgataaaacaagagc |
201 |
Q |
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| T |
2907291 |
cacactcacacatttttcttcaatgagtacaaattaaaatgaagttacattgatggtacaaagagtatagaatggtttaacgtcttgatagaacaagagc |
2907192 |
T |
|
| Q |
202 |
agacaaaaggattagcattatgaagagaggaattgcaatgaaggatccaatcaatgaaccagaaattctctcacagaaagagttatattgctgacaaaaa |
301 |
Q |
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| T |
2907191 |
agacaaaaggattagcattatgaagagaggaattgcaatgaaggatccaatcaatgaaccagaaattctctcacagaaagagttatattgctgacaaaaa |
2907092 |
T |
|
| Q |
302 |
gcaaaccaatttgctttcctattccctttgtgtgccaaataaacaatagaagctgcagctgaagaaccagctgtcaataaacctagcattacctgcatat |
401 |
Q |
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| T |
2907091 |
gcaaaccaatttgctttcctattccctttgtgtgccaaataaacaatagaagctgcagctgaagaaccagctgtcaataaacctagcattacctgcatat |
2906992 |
T |
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| Q |
402 |
atatggtataaagtttattaatcacggtccagtgcaagtggttggtgcgcaatgtgaacaaatgttgtaaaaatcgaatattatgatgatttttactcgt |
501 |
Q |
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| T |
2906991 |
atatggtataaagtttattaatcacggtccagtgcaagtggttggtgcgcaatgtgaacaaatgtcataaaaatcgaatattacgatgatttttactcgt |
2906892 |
T |
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| Q |
502 |
aaaaaatgtatcgagttagttaactatg |
529 |
Q |
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| T |
2906891 |
aaaaaatgtatccagttagttaactatg |
2906864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 400 - 756
Target Start/End: Complemental strand, 2906803 - 2906445
Alignment:
| Q |
400 |
atatatggtataaagtttattaatcacgg-tccagtgcaagtggttggtgcgcaatgtgaacaaatgttgtaaaaatcgaatattatgatgatttttact |
498 |
Q |
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||||||||||||||||| | |||||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
2906803 |
atatatggtataaagttcaataatcatgggtccagtacaagtggttggtgcgtaatgtgaacaaatgtagtaaaaatcggatattaggatgatttttact |
2906704 |
T |
|
| Q |
499 |
cgtaaaaaatgtatcgagttagttaactatgatttttt-attcacacattaatccaaaaataaattgtcattaacagattaataccgtgtccaagattat |
597 |
Q |
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| T |
2906703 |
cgtaaaaaatgtatcgagttaattaactatgatttttttattcacatattaatataaaaataaattgtcattaacagattaataccgtgtccaagattat |
2906604 |
T |
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| Q |
598 |
gaatataaccctagtcattccagcactgctccttatgatatgcaagatggatagaggcagagaaagaatcaggtagccactcacaatagcactagcaact |
697 |
Q |
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| T |
2906603 |
gaatataaccctagtcattccagcactgctccttatgatatgcaagatggatagaggcagagaaagaatcaggtagccactcacaatagcactagcaact |
2906504 |
T |
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| Q |
698 |
acaaaaaacctgtatttaatttcaaagaccaagaaaaagagactagtttagcatattaa |
756 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2906503 |
acaaaaaacctgtatttaatttcaaagaccaagaaaaagagattagtttagcatattaa |
2906445 |
T |
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Back To:
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