View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4383_high_3 (Length: 315)

Name: NF4383_high_3
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4383_high_3
NF4383_high_3
[»] chr4 (2 HSPs)
chr4 (8-296)||(22912835-22913120)
chr4 (8-296)||(22965402-22965687)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 22912835 - 22913120
Alignment:
8 tgaaatgaaatctaacgtgtttctaatgtactgtgcttcgtttatttatctaannnnnnnn-cttcttcatatcatgttgttttgtttatactatgaaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||||||||||||||    
22912835 tgaaatgaaatctaacgtgtttctaatgtactgtgcttcgtttatttatgtaattttttcttcttcttcatatcatgttgttttgtttatactatgaaag 22912934  T
107 aaatgagatatgcttcaaaattgatgctttagggtttgtggcgattaattaatatagccttagaagatttttataatacattatttttaacgacttaaat 206  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
22912935 aaatgaaatatgcttcaaaattgatgctttagggtttgtggcgatta----atatagccttagaagatttttataatacattatttttaacgacttaaat 22913030  T
207 gcatcggtagagtgttctgtggtttgaaattgaggtttgggcagcnnnnnnngggggcaagcaatcattttagttcgtgaatgtgcgagt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||    
22913031 gcatcggtagagtgttctgtggtttgaaattgaggtttgggcaactttttttgggggcaagcaatcattttagttcgtgaatgtgcgagt 22913120  T

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Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 22965687 - 22965402
Alignment:
8 tgaaatgaaatctaacgtgtttctaatgtactgtgcttcgtttatttatctaannnnnnnn-cttcttcatatcatgttgttttgtttatactatgaaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||||||||||||||    
22965687 tgaaatgaaatctaacgtgtttctaatgtactgtgcttcgtttatttatgtaattttttcttcttcttcatatcatgttgttttgtttatactatgaaag 22965588  T
107 aaatgagatatgcttcaaaattgatgctttagggtttgtggcgattaattaatatagccttagaagatttttataatacattatttttaacgacttaaat 206  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
22965587 aaatgaaatatgcttcaaaattgatgctttagggtttgtggcgattaat----atagccttagaagatttttataatacattatttttaacgacttaaat 22965492  T
207 gcatcggtagagtgttctgtggtttgaaattgaggtttgggcagcnnnnnnngggggcaagcaatcattttagttcgtgaatgtgcgagt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||    
22965491 gcatcggtagagtgttctgtggtttgaaattgaggtttgggcaactttttttgggggcaagcaatcattttagttcgtgaatgtgcgagt 22965402  T

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