View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4383_high_3 (Length: 315)
Name: NF4383_high_3
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4383_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 22912835 - 22913120
Alignment:
| Q |
8 |
tgaaatgaaatctaacgtgtttctaatgtactgtgcttcgtttatttatctaannnnnnnn-cttcttcatatcatgttgttttgtttatactatgaaag |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22912835 |
tgaaatgaaatctaacgtgtttctaatgtactgtgcttcgtttatttatgtaattttttcttcttcttcatatcatgttgttttgtttatactatgaaag |
22912934 |
T |
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| Q |
107 |
aaatgagatatgcttcaaaattgatgctttagggtttgtggcgattaattaatatagccttagaagatttttataatacattatttttaacgacttaaat |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22912935 |
aaatgaaatatgcttcaaaattgatgctttagggtttgtggcgatta----atatagccttagaagatttttataatacattatttttaacgacttaaat |
22913030 |
T |
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| Q |
207 |
gcatcggtagagtgttctgtggtttgaaattgaggtttgggcagcnnnnnnngggggcaagcaatcattttagttcgtgaatgtgcgagt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
22913031 |
gcatcggtagagtgttctgtggtttgaaattgaggtttgggcaactttttttgggggcaagcaatcattttagttcgtgaatgtgcgagt |
22913120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 22965687 - 22965402
Alignment:
| Q |
8 |
tgaaatgaaatctaacgtgtttctaatgtactgtgcttcgtttatttatctaannnnnnnn-cttcttcatatcatgttgttttgtttatactatgaaag |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22965687 |
tgaaatgaaatctaacgtgtttctaatgtactgtgcttcgtttatttatgtaattttttcttcttcttcatatcatgttgttttgtttatactatgaaag |
22965588 |
T |
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| Q |
107 |
aaatgagatatgcttcaaaattgatgctttagggtttgtggcgattaattaatatagccttagaagatttttataatacattatttttaacgacttaaat |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22965587 |
aaatgaaatatgcttcaaaattgatgctttagggtttgtggcgattaat----atagccttagaagatttttataatacattatttttaacgacttaaat |
22965492 |
T |
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| Q |
207 |
gcatcggtagagtgttctgtggtttgaaattgaggtttgggcagcnnnnnnngggggcaagcaatcattttagttcgtgaatgtgcgagt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
22965491 |
gcatcggtagagtgttctgtggtttgaaattgaggtttgggcaactttttttgggggcaagcaatcattttagttcgtgaatgtgcgagt |
22965402 |
T |
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