View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4383_low_4 (Length: 360)
Name: NF4383_low_4
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4383_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 25028693 - 25028809
Alignment:
Q |
114 |
tctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagttt |
212 |
Q |
|
|
|||||||||||||||| | ||||||||||||||||| | | ||||||||| ||| |||||| |||| ||| | |||||||||||||| ||| || ||| |
|
|
T |
25028693 |
tctttaagagtcttaaattttaactttttataaaaacgtgtgtattcaatgcattgaaaattgaactgtttgacttttttaaagaataattttctaattt |
25028792 |
T |
 |
Q |
213 |
ggaatgtttaaagagtg |
229 |
Q |
|
|
|||||||||||||||| |
|
|
T |
25028793 |
tgaatgtttaaagagtg |
25028809 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 8171248 - 8171300
Alignment:
Q |
290 |
ataagctatgatcttctcacgacaatatttatgtatatatacaatacattgcc |
342 |
Q |
|
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
T |
8171248 |
ataagctatggtcttctcaccacaatatttatgtatatatacaatacattgcc |
8171300 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 48098043 - 48097946
Alignment:
Q |
134 |
taactttttataaaaacttatctattcaatgtatta-aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgc |
230 |
Q |
|
|
||||||||||||||||| | | |||| |||||||| ||||| |||||||||| |||||||||||||| ||||||| ||| |||| ||||| ||||| |
|
|
T |
48098043 |
taactttttataaaaacatgtgtatttaatgtattggaaattgaactatttaacttttttaaagaataatttcttaatttagaatacttaaaaagtgc |
48097946 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 19597145 - 19597237
Alignment:
Q |
114 |
tctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatta-aaattaaactatttaaattttttaaagaatagtttc |
205 |
Q |
|
|
|||||||| ||||||| | ||||| ||||||||||| |||| ||||||||| |||| ||||| |||||||| | ||||||||||||| |||| |
|
|
T |
19597145 |
tctttaagggtcttaaataataacattttataaaaatttatgtattcaatgcattagaaattgaactatttgacatttttaaagaataatttc |
19597237 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 41956481 - 41956541
Alignment:
Q |
169 |
aaaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtg |
229 |
Q |
|
|
|||||| || ||||||||||| |||||||||| ||||||| |||||| || |||||||||| |
|
|
T |
41956481 |
aaaattgaaatatttaaatttcttaaagaatactttcttattttggattgcttaaagagtg |
41956541 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 53737855 - 53737907
Alignment:
Q |
179 |
tatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgcc |
231 |
Q |
|
|
||||| |||||||||||||||| ||||||| ||||||| | |||||||||||| |
|
|
T |
53737855 |
tatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgcc |
53737907 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 4394977 - 4394908
Alignment:
Q |
156 |
tattcaatgtattaaaa-ttaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaa |
224 |
Q |
|
|
||||||||||||||||| ||||| ||||| | |||||||||||||| || |||| ||| |||||||||| |
|
|
T |
4394977 |
tattcaatgtattaaaaattaaaatatttgatttttttaaagaataattacttaatttaaaatgtttaaa |
4394908 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 50086445 - 50086518
Alignment:
Q |
156 |
tattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagt |
228 |
Q |
|
|
||||||||| ||| ||||| ||| ||||| | |||||||||||||| || ||| ||||||||||||||||||| |
|
|
T |
50086445 |
tattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagt |
50086518 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 12658332 - 12658252
Alignment:
Q |
138 |
tttttataaaaacttatctattcaatgtattaaaa-ttaaactatttaaattttttaaagaatagtttcttagtttggaat |
217 |
Q |
|
|
||||||||||||| | | |||| |||| ||||||| || | |||||||||||||||||||||||||| ||| ||| |||| |
|
|
T |
12658332 |
tttttataaaaacatgtgtatttaatgcattaaaaattgtaatatttaaattttttaaagaatagttttttaatttagaat |
12658252 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 24041020 - 24041133
Alignment:
Q |
116 |
tttaagagtcttaattgataactttttataaaaacttatctattcaatgtatta-aaattaaactatttaaattttttaaagaatagtttcttagtttgg |
214 |
Q |
|
|
|||||| ||||||| | ||||||||||| |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||| |||| || |||| |
|
|
T |
24041020 |
tttaagggtcttaaatagtaactttttatgaaaagttatgtatttaatgtattggaaattaaactatttgaattttttaaagaataatttcataatttga |
24041119 |
T |
 |
Q |
215 |
aatgtttaaagagt |
228 |
Q |
|
|
||| ||||||||| |
|
|
T |
24041120 |
tatgcttaaagagt |
24041133 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 27650851 - 27650919
Alignment:
Q |
161 |
aatgtattaaaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtg |
229 |
Q |
|
|
||||||| |||||||| ||||||| ||||||| | |||| |||||| |||||||||||||||||||| |
|
|
T |
27650851 |
aatgtatcgaaattaaaatatttaacttttttatataataatttctttttttggaatgtttaaagagtg |
27650919 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 34032142 - 34032203
Alignment:
Q |
170 |
aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgcc |
231 |
Q |
|
|
||||| || ||||||| |||||||||||||| || |||| ||| ||||| |||||||||||| |
|
|
T |
34032142 |
aaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaagagtgcc |
34032203 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 35599816 - 35599912
Alignment:
Q |
133 |
ataactttttataaaaacttatctattcaatgtattaaaatta-aactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagt |
228 |
Q |
|
|
|||||||||||| |||| |||| ||||||||| ||| ||||| |||||||| |||||||||||||||| |||| || ||| | ||||||||||||| |
|
|
T |
35599816 |
ataactttttatgaaaagttatgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttagtatgtttaaagagt |
35599912 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 10419988 - 10419923
Alignment:
Q |
110 |
acattctttaagagtcttaattgataactttttataaaaacttatctattcaatgtattaaaatta |
175 |
Q |
|
|
||||||||||||| |||||| ||||| |||||||||||||| | | ||||||||||||| |||||| |
|
|
T |
10419988 |
acattctttaagaatcttaaatgatatctttttataaaaacatgtgtattcaatgtattgaaatta |
10419923 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 18926436 - 18926320
Alignment:
Q |
116 |
tttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagtttgg |
214 |
Q |
|
|
|||||| ||| ||| || ||||||||||| |||| || | ||||||||| ||| |||||| |||||||| | ||||||||||||| |||| | ||| |
|
|
T |
18926436 |
tttaagggtcataaatggtaactttttatgaaaagttgtgtattcaatgcattgaaaattgaactatttcacctttttaaagaataatttcatgatttaa |
18926337 |
T |
 |
Q |
215 |
aatgtttaaagagtgcc |
231 |
Q |
|
|
|||| |||||||||||| |
|
|
T |
18926336 |
aatgcttaaagagtgcc |
18926320 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 5423735 - 5423828
Alignment:
Q |
108 |
agacattctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaata |
200 |
Q |
|
|
||||| ||||||| ||||||| || ||| ||||||| ||||||||| |||| |||| ||| |||||| |||||||||| |||||||||||||| |
|
|
T |
5423735 |
agacactctttaaaggtcttaaatggtaattttttatgaaaacttatgtatttaatgcattgaaaattgaactatttaacttttttaaagaata |
5423828 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 36621987 - 36621928
Alignment:
Q |
170 |
aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtg |
229 |
Q |
|
|
|||| ||| ||||||| |||||||||||||| || |||| |||| ||||||||||||||| |
|
|
T |
36621987 |
aaatcaaaatatttaacttttttaaagaataattgcttattttgaaatgtttaaagagtg |
36621928 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 34652486 - 34652544
Alignment:
Q |
138 |
tttttataaaaacttatctattcaatgtattaaaa-ttaaactatttaaattttttaaa |
195 |
Q |
|
|
|||||||||||| ||| |||||||| |||||||| ||||||||||||| ||||||||| |
|
|
T |
34652486 |
tttttataaaaatatatgtattcaatatattaaaaattaaactatttaatttttttaaa |
34652544 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 1048674 - 1048782
Alignment:
Q |
123 |
gtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagtttggaatgttt |
221 |
Q |
|
|
||||||| | ||| |||||||| |||| |||| |||||| | ||| |||||| |||||||||| |||| ||||||||| ||| ||| ||||| ||| || |
|
|
T |
1048674 |
gtcttaaataatatctttttatgaaaaattatgcattcaacgcattgaaaattgaactatttaactttt-taaagaataattttttaatttggtatgctt |
1048772 |
T |
 |
Q |
222 |
aaagagtgcc |
231 |
Q |
|
|
|||||||||| |
|
|
T |
1048773 |
aaagagtgcc |
1048782 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 26857228 - 26857273
Alignment:
Q |
156 |
tattcaatgtatt-aaaattaaactatttaaattttttaaagaata |
200 |
Q |
|
|
||||||||| ||| ||||||||||||||||| |||||||||||||| |
|
|
T |
26857228 |
tattcaatgcattgaaaattaaactatttaacttttttaaagaata |
26857273 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 29487074 - 29487173
Alignment:
Q |
134 |
taactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaa-ttttttaaagaatagtttcttagtttggaatgtttaaagagtgcc |
231 |
Q |
|
|
|||||||||||||||| | | |||| |||| ||| |||||| ||||||||||| |||||||||||||| ||||||| ||| |||| || |||||||||| |
|
|
T |
29487074 |
taactttttataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaagaataatttcttaatttagaatattaaaagagtgcc |
29487173 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 39691107 - 39691225
Alignment:
Q |
112 |
attctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagt |
210 |
Q |
|
|
|||||||||| |||||| | ||| ||||||| |||| || | ||||||||| ||| |||||| |||||||| | |||||||||||||| ||| ||| | |
|
|
T |
39691107 |
attctttaaggatcttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaat |
39691206 |
T |
 |
Q |
211 |
ttggaatgtttaaagagtg |
229 |
Q |
|
|
||||||| |||||||||| |
|
|
T |
39691207 |
gtggaatgcttaaagagtg |
39691225 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 37564384 - 37564443
Alignment:
Q |
170 |
aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtg |
229 |
Q |
|
|
||||| |||||||| | |||||||||||||| ||||||| ||| | |||||||||||||| |
|
|
T |
37564384 |
aaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtg |
37564443 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 15352122 - 15352182
Alignment:
Q |
170 |
aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgc |
230 |
Q |
|
|
||||| |||||||| | ||||||| |||||| ||| ||| ||| ||||||||||||||||| |
|
|
T |
15352122 |
aaattgaactatttgacttttttacagaataattttttaatttagaatgtttaaagagtgc |
15352182 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 18808835 - 18808879
Alignment:
Q |
187 |
ttttttaaagaatagtttcttagtttggaatgtttaaagagtgcc |
231 |
Q |
|
|
||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
T |
18808835 |
ttttttaaacaatagtttcttcattaggaatgtttaaagagtgcc |
18808879 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 13538512 - 13538389
Alignment:
Q |
109 |
gacattctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttctt |
207 |
Q |
|
|
|||| |||||||| ||||||| | ||||||||||| |||| |||| ||||||||| ||| ||||| || ||||| |||||||||||||||| ||| | |
|
|
T |
13538512 |
gacactctttaagggtcttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttct |
13538413 |
T |
 |
Q |
208 |
agtttggaatgtttaaagagtgcc |
231 |
Q |
|
|
| ||| | ||| |||||||||||| |
|
|
T |
13538412 |
aatttagtatgcttaaagagtgcc |
13538389 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 45076180 - 45076241
Alignment:
Q |
170 |
aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgcc |
231 |
Q |
|
|
|||||||| ||||||| |||||||||||||| || |||| ||| | |||||||||||||||| |
|
|
T |
45076180 |
aaattaaaatatttaacttttttaaagaataattgcttattttagtatgtttaaagagtgcc |
45076241 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 44195598 - 44195500
Alignment:
Q |
134 |
taactttttataaaaacttatctattcaatgtatta-aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgcc |
231 |
Q |
|
|
||||||||||||||||| | | |||| |||| ||| ||||| || ||||||| |||| ||||||||| ||||||| ||| |||| |||||||||||| |
|
|
T |
44195598 |
taactttttataaaaacatgtgtatttaatgcattgtaaattgaattatttaacttttgtaaagaataatttcttaatttaaaatgcttaaagagtgcc |
44195500 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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