View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4383_low_4 (Length: 360)

Name: NF4383_low_4
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4383_low_4
NF4383_low_4
[»] chr6 (1 HSPs)
chr6 (114-229)||(25028693-25028809)
[»] chr4 (8 HSPs)
chr4 (290-342)||(8171248-8171300)
chr4 (134-230)||(48097946-48098043)
chr4 (114-205)||(19597145-19597237)
chr4 (169-229)||(41956481-41956541)
chr4 (179-231)||(53737855-53737907)
chr4 (156-224)||(4394908-4394977)
chr4 (156-228)||(50086445-50086518)
chr4 (138-217)||(12658252-12658332)
[»] chr5 (3 HSPs)
chr5 (116-228)||(24041020-24041133)
chr5 (161-229)||(27650851-27650919)
chr5 (170-231)||(34032142-34032203)
[»] chr7 (3 HSPs)
chr7 (133-228)||(35599816-35599912)
chr7 (110-175)||(10419923-10419988)
chr7 (116-231)||(18926320-18926436)
[»] chr1 (5 HSPs)
chr1 (108-200)||(5423735-5423828)
chr1 (170-229)||(36621928-36621987)
chr1 (138-195)||(34652486-34652544)
chr1 (123-231)||(1048674-1048782)
chr1 (156-200)||(26857228-26857273)
[»] chr8 (5 HSPs)
chr8 (134-231)||(29487074-29487173)
chr8 (112-229)||(39691107-39691225)
chr8 (170-229)||(37564384-37564443)
chr8 (170-230)||(15352122-15352182)
chr8 (187-231)||(18808835-18808879)
[»] chr2 (3 HSPs)
chr2 (109-231)||(13538389-13538512)
chr2 (170-231)||(45076180-45076241)
chr2 (134-231)||(44195500-44195598)


Alignment Details
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 25028693 - 25028809
Alignment:
Q  114 tctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagttt 212  Q
    |||||||||||||||| |  ||||||||||||||||| | | ||||||||| ||| |||||| |||| ||| | |||||||||||||| |||  || |||    
T  25028693 tctttaagagtcttaaattttaactttttataaaaacgtgtgtattcaatgcattgaaaattgaactgtttgacttttttaaagaataattttctaattt 25028792  T
Q  213 ggaatgtttaaagagtg 229  Q
     ||||||||||||||||    
T  25028793 tgaatgtttaaagagtg 25028809  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 8171248 - 8171300
Alignment:
Q  290 ataagctatgatcttctcacgacaatatttatgtatatatacaatacattgcc 342  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  8171248 ataagctatggtcttctcaccacaatatttatgtatatatacaatacattgcc 8171300  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 48098043 - 48097946
Alignment:
Q  134 taactttttataaaaacttatctattcaatgtatta-aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgc 230  Q
    ||||||||||||||||| | | |||| ||||||||  ||||| |||||||||| |||||||||||||| ||||||| ||| ||||  ||||| |||||    
T  48098043 taactttttataaaaacatgtgtatttaatgtattggaaattgaactatttaacttttttaaagaataatttcttaatttagaatacttaaaaagtgc 48097946  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 19597145 - 19597237
Alignment:
Q  114 tctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatta-aaattaaactatttaaattttttaaagaatagtttc 205  Q
    |||||||| ||||||| | ||||| ||||||||||| |||| ||||||||| |||| ||||| |||||||| |  ||||||||||||| ||||    
T  19597145 tctttaagggtcttaaataataacattttataaaaatttatgtattcaatgcattagaaattgaactatttgacatttttaaagaataatttc 19597237  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 41956481 - 41956541
Alignment:
Q  169 aaaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtg 229  Q
    |||||| || ||||||||||| |||||||||| ||||||| |||||| || ||||||||||    
T  41956481 aaaattgaaatatttaaatttcttaaagaatactttcttattttggattgcttaaagagtg 41956541  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 53737855 - 53737907
Alignment:
Q  179 tatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgcc 231  Q
    ||||| |||||||||||||||| ||||||| ||||||| | ||||||||||||    
T  53737855 tatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgcc 53737907  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 4394977 - 4394908
Alignment:
Q  156 tattcaatgtattaaaa-ttaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaa 224  Q
    ||||||||||||||||| ||||| ||||| | |||||||||||||| || |||| |||  ||||||||||    
T  4394977 tattcaatgtattaaaaattaaaatatttgatttttttaaagaataattacttaatttaaaatgtttaaa 4394908  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 50086445 - 50086518
Alignment:
Q  156 tattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagt 228  Q
    ||||||||| ||| ||||| ||| ||||| | |||||||||||||| ||  ||| |||||||||||||||||||    
T  50086445 tattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagt 50086518  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 12658332 - 12658252
Alignment:
Q  138 tttttataaaaacttatctattcaatgtattaaaa-ttaaactatttaaattttttaaagaatagtttcttagtttggaat 217  Q
    ||||||||||||| | | |||| |||| ||||||| ||  | |||||||||||||||||||||||||| ||| ||| ||||    
T  12658332 tttttataaaaacatgtgtatttaatgcattaaaaattgtaatatttaaattttttaaagaatagttttttaatttagaat 12658252  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 24041020 - 24041133
Alignment:
Q  116 tttaagagtcttaattgataactttttataaaaacttatctattcaatgtatta-aaattaaactatttaaattttttaaagaatagtttcttagtttgg 214  Q
    |||||| ||||||| |  ||||||||||| |||| |||| |||| ||||||||  |||||||||||||| |||||||||||||||| |||| || ||||     
T  24041020 tttaagggtcttaaatagtaactttttatgaaaagttatgtatttaatgtattggaaattaaactatttgaattttttaaagaataatttcataatttga 24041119  T
Q  215 aatgtttaaagagt 228  Q
     ||| |||||||||    
T  24041120 tatgcttaaagagt 24041133  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 27650851 - 27650919
Alignment:
Q  161 aatgtattaaaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtg 229  Q
    |||||||  |||||||| ||||||| ||||||| | |||| ||||||  ||||||||||||||||||||    
T  27650851 aatgtatcgaaattaaaatatttaacttttttatataataatttctttttttggaatgtttaaagagtg 27650919  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 34032142 - 34032203
Alignment:
Q  170 aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgcc 231  Q
    ||||| || ||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||    
T  34032142 aaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaagagtgcc 34032203  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 35599816 - 35599912
Alignment:
Q  133 ataactttttataaaaacttatctattcaatgtattaaaatta-aactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagt 228  Q
    |||||||||||| |||| |||| ||||||||| ||| |||||  |||||||| |||||||||||||||| |||| || ||| | |||||||||||||    
T  35599816 ataactttttatgaaaagttatgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttagtatgtttaaagagt 35599912  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 10419988 - 10419923
Alignment:
Q  110 acattctttaagagtcttaattgataactttttataaaaacttatctattcaatgtattaaaatta 175  Q
    ||||||||||||| |||||| ||||| |||||||||||||| | | ||||||||||||| ||||||    
T  10419988 acattctttaagaatcttaaatgatatctttttataaaaacatgtgtattcaatgtattgaaatta 10419923  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 18926436 - 18926320
Alignment:
Q  116 tttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagtttgg 214  Q
    |||||| ||| ||| || ||||||||||| |||| || | ||||||||| ||| |||||| |||||||| |  ||||||||||||| |||| |  |||      
T  18926436 tttaagggtcataaatggtaactttttatgaaaagttgtgtattcaatgcattgaaaattgaactatttcacctttttaaagaataatttcatgatttaa 18926337  T
Q  215 aatgtttaaagagtgcc 231  Q
    |||| ||||||||||||    
T  18926336 aatgcttaaagagtgcc 18926320  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 5423735 - 5423828
Alignment:
Q  108 agacattctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaata 200  Q
    ||||| |||||||  ||||||| || ||| ||||||| ||||||||| |||| |||| ||| |||||| |||||||||| ||||||||||||||    
T  5423735 agacactctttaaaggtcttaaatggtaattttttatgaaaacttatgtatttaatgcattgaaaattgaactatttaacttttttaaagaata 5423828  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 36621987 - 36621928
Alignment:
Q  170 aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtg 229  Q
    |||| ||| ||||||| |||||||||||||| || |||| |||| |||||||||||||||    
T  36621987 aaatcaaaatatttaacttttttaaagaataattgcttattttgaaatgtttaaagagtg 36621928  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 34652486 - 34652544
Alignment:
Q  138 tttttataaaaacttatctattcaatgtattaaaa-ttaaactatttaaattttttaaa 195  Q
    ||||||||||||  ||| |||||||| |||||||| ||||||||||||| |||||||||    
T  34652486 tttttataaaaatatatgtattcaatatattaaaaattaaactatttaatttttttaaa 34652544  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 1048674 - 1048782
Alignment:
Q  123 gtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagtttggaatgttt 221  Q
    ||||||| | ||| |||||||| |||| ||||  |||||| | ||| |||||| |||||||||| |||| ||||||||| ||| ||| ||||| ||| ||    
T  1048674 gtcttaaataatatctttttatgaaaaattatgcattcaacgcattgaaaattgaactatttaactttt-taaagaataattttttaatttggtatgctt 1048772  T
Q  222 aaagagtgcc 231  Q
    ||||||||||    
T  1048773 aaagagtgcc 1048782  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 26857228 - 26857273
Alignment:
Q  156 tattcaatgtatt-aaaattaaactatttaaattttttaaagaata 200  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  26857228 tattcaatgcattgaaaattaaactatttaacttttttaaagaata 26857273  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 29487074 - 29487173
Alignment:
Q  134 taactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaa-ttttttaaagaatagtttcttagtttggaatgtttaaagagtgcc 231  Q
    ||||||||||||||||  | | |||| |||| ||| |||||| ||||||||||| |||||||||||||| ||||||| ||| |||| || ||||||||||    
T  29487074 taactttttataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaagaataatttcttaatttagaatattaaaagagtgcc 29487173  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 39691107 - 39691225
Alignment:
Q  112 attctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttcttagt 210  Q
    ||||||||||  |||||| |  ||| ||||||| |||| || | ||||||||| ||| |||||| |||||||| | |||||||||||||| ||| ||| |    
T  39691107 attctttaaggatcttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaat 39691206  T
Q  211 ttggaatgtttaaagagtg 229  Q
     ||||||| ||||||||||    
T  39691207 gtggaatgcttaaagagtg 39691225  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 37564384 - 37564443
Alignment:
Q  170 aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtg 229  Q
    ||||| |||||||| | |||||||||||||| ||||||| ||| | ||||||||||||||    
T  37564384 aaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtg 37564443  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 15352122 - 15352182
Alignment:
Q  170 aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgc 230  Q
    ||||| |||||||| | ||||||| |||||| ||| ||| ||| |||||||||||||||||    
T  15352122 aaattgaactatttgacttttttacagaataattttttaatttagaatgtttaaagagtgc 15352182  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 18808835 - 18808879
Alignment:
Q  187 ttttttaaagaatagtttcttagtttggaatgtttaaagagtgcc 231  Q
    ||||||||| |||||||||||  || |||||||||||||||||||    
T  18808835 ttttttaaacaatagtttcttcattaggaatgtttaaagagtgcc 18808879  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 13538512 - 13538389
Alignment:
Q  109 gacattctttaagagtcttaattgataactttttataaaaacttatctattcaatgtatt-aaaattaaactatttaaattttttaaagaatagtttctt 207  Q
    |||| |||||||| ||||||| |  ||||||||||| |||| |||| ||||||||| |||  ||||| || ||||| |||||||||||||||| |||  |    
T  13538512 gacactctttaagggtcttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttct 13538413  T
Q  208 agtttggaatgtttaaagagtgcc 231  Q
    | ||| | ||| ||||||||||||    
T  13538412 aatttagtatgcttaaagagtgcc 13538389  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 45076180 - 45076241
Alignment:
Q  170 aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgcc 231  Q
    |||||||| ||||||| |||||||||||||| || |||| ||| | ||||||||||||||||    
T  45076180 aaattaaaatatttaacttttttaaagaataattgcttattttagtatgtttaaagagtgcc 45076241  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 44195598 - 44195500
Alignment:
Q  134 taactttttataaaaacttatctattcaatgtatta-aaattaaactatttaaattttttaaagaatagtttcttagtttggaatgtttaaagagtgcc 231  Q
    ||||||||||||||||| | | |||| |||| |||  ||||| || ||||||| |||| ||||||||| ||||||| |||  |||| ||||||||||||    
T  44195598 taactttttataaaaacatgtgtatttaatgcattgtaaattgaattatttaacttttgtaaagaataatttcttaatttaaaatgcttaaagagtgcc 44195500  T

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