View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4383_low_8 (Length: 239)

Name: NF4383_low_8
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4383_low_8
NF4383_low_8
[»] chr8 (1 HSPs)
chr8 (1-231)||(42208796-42209026)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 42208796 - 42209026
Alignment:
1 ttcttctgccatttcaatcttatatgattatgttgtataaggtatatgccaaatgccaaaaggttgcagtaggaacataaaaacatctaggatggcaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
42208796 ttcttctgccatttcaatcttatatgattatgttgtataaggtatatgccaaatgccaaaaggttgcagtaggaacataaaaacatctaggatggcatcc 42208895  T
101 tgccttaagtgatgaggaaaaaataaatgcattaccggtcaaaatccaaggtcaaagcttgggaacgcttctctttcactcgagatatcctcggcactct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42208896 tgccttaagtgatgaggaaaaaataaatgcattaccggtcaaaatccaaggtcaaagcttgggaacgcttctctttcactcgagatatcctcggcactct 42208995  T
201 gtccttcattggaaatagggcaagaataatc 231  Q
    |||||||||||||||||||||||||| ||||    
42208996 gtccttcattggaaatagggcaagaagaatc 42209026  T

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