View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4383_low_9 (Length: 238)

Name: NF4383_low_9
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4383_low_9
NF4383_low_9
[»] chr7 (2 HSPs)
chr7 (18-238)||(3620962-3621182)
chr7 (31-234)||(3631363-3631566)
[»] scaffold0287 (1 HSPs)
scaffold0287 (31-234)||(14519-14722)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 3621182 - 3620962
Alignment:
Q  18 gtttgttcttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3621182 gtttgttcttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaag 3621083  T
Q  118 ggggtgagaaaagcaggttccatggtttacttaatgagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||| ||||    
T  3621082 ggggtgagaaaagcaggttccatggtttacttaatgagacacaagctattttcctttccttttttgtttcagattatattccttttatggggtgggttga 3620983  T
Q  218 taaactcaccggggcaattgc 238  Q
    ||||||||| |||||||||||    
T  3620982 taaactcacaggggcaattgc 3620962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 3631566 - 3631363
Alignment:
Q  31 aaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag 130  Q
    |||||||||||||||||||| || |||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3631566 aaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag 3631467  T
Q  131 caggttccatggtttacttaatgagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactcaccggg 230  Q
    ||||||||||  ||||||| |||||||| |||||||||||||||| || |||||||||||| ||||||||||  |||||||||||||||||||||| |||    
T  3631466 caggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggg 3631367  T
Q  231 gcaa 234  Q
    ||||    
T  3631366 gcaa 3631363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 31 - 234
Target Start/End: Original strand, 14519 - 14722
Alignment:
Q  31 aaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag 130  Q
    |||||||||||||||||||| || |||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14519 aaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag 14618  T
Q  131 caggttccatggtttacttaatgagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactcaccggg 230  Q
    ||||||||||  ||||||| |||||||| |||||||||||||||| || |||||||||||| ||||||||||  |||||||||||||||||||||| |||    
T  14619 caggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggg 14718  T
Q  231 gcaa 234  Q
    ||||    
T  14719 gcaa 14722  T

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