View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4383_low_9 (Length: 238)
Name: NF4383_low_9
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4383_low_9 |
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[»] chr7 (2 HSPs) |
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[»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 3621182 - 3620962
Alignment:
Q |
18 |
gtttgttcttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaag |
117 |
Q |
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T |
3621182 |
gtttgttcttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaag |
3621083 |
T |
 |
Q |
118 |
ggggtgagaaaagcaggttccatggtttacttaatgagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattga |
217 |
Q |
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T |
3621082 |
ggggtgagaaaagcaggttccatggtttacttaatgagacacaagctattttcctttccttttttgtttcagattatattccttttatggggtgggttga |
3620983 |
T |
 |
Q |
218 |
taaactcaccggggcaattgc |
238 |
Q |
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T |
3620982 |
taaactcacaggggcaattgc |
3620962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 3631566 - 3631363
Alignment:
Q |
31 |
aaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag |
130 |
Q |
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T |
3631566 |
aaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag |
3631467 |
T |
 |
Q |
131 |
caggttccatggtttacttaatgagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactcaccggg |
230 |
Q |
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T |
3631466 |
caggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggg |
3631367 |
T |
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Q |
231 |
gcaa |
234 |
Q |
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|||| |
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T |
3631366 |
gcaa |
3631363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 31 - 234
Target Start/End: Original strand, 14519 - 14722
Alignment:
Q |
31 |
aaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag |
130 |
Q |
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T |
14519 |
aaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag |
14618 |
T |
 |
Q |
131 |
caggttccatggtttacttaatgagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactcaccggg |
230 |
Q |
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T |
14619 |
caggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggg |
14718 |
T |
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Q |
231 |
gcaa |
234 |
Q |
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|||| |
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T |
14719 |
gcaa |
14722 |
T |
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