View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4384-Insertion-2 (Length: 1072)
Name: NF4384-Insertion-2
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4384-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 882; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 882; E-Value: 0
Query Start/End: Original strand, 8 - 1072
Target Start/End: Complemental strand, 32183653 - 32182576
Alignment:
| Q |
8 |
acatctaacggcagagtggcagcagttcttttctattattttaagcttaaggtttacgatgtacaacttgtatttacatatacaacggtctagattagaa |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32183653 |
acatctaacggcagagtggctgcagttcttttctattattttaagcttaaggtttacgatgtacaacttgtatttacata--caacggtctagattagaa |
32183556 |
T |
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| Q |
108 |
catttcctatgaactgtacaaataacaacatatctgtaactatgaaaatactcaagacattatttgcatggagcagaatttgggcaagcacacaaattca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183555 |
catttcctatgaactgtacaaataacaacatatctgtaactatgaaaatactcaagaaattatttgcatggagcagaatttgggcaagcacacaaattca |
32183456 |
T |
|
| Q |
208 |
cagtgatgcaatatataatatatctactgaaattaagggaagatgtgtacctcatggaaaactagtggtatagaatttgaatcagcttgcaatttacttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183455 |
cagtgatgcaatatataatatatctactgaaattaagggaagatgtgtacctcatggaaaactagtggtatagaatttgaatcagcttgcaatttacttc |
32183356 |
T |
|
| Q |
308 |
cacttagttcctgcaaaggaacaactttctttagccattgtagattaattatctatgtgaaattgatcacaacgttcaaacctggataaagaagnnnnnn |
407 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32183355 |
cacttagttcctgcaaaggaacaactttctttagctattgtag----attatctatgtgaaattgatcacaacgttcaaacccggataaagaagaaaaaa |
32183260 |
T |
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| Q |
408 |
nnctaatctaacaactaactactaatatttgccattcnnnnnnnnngtttaggtctgaaaaggtaccttcacttgaatctgcaagtatttaacatagtca |
507 |
Q |
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| T |
32183259 |
aactaatctaacaactaactactaatatttgccattcaaaaaaatagtttaggtctgaaaaggtaccttcacttgaatctgcaagtatttaacatagtca |
32183160 |
T |
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| Q |
508 |
atgatatcatccaatatgtaagcttgactaccctgcaaattaaaattcaacgtatatgagctacttaaatttggtcccaaaaaattagctacttaaataa |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183159 |
atgatatcatccaatatgtaagcttgactaccctgcaaattaaaattcaacatatatgagctacttaaatttggtcccaaaaaattagctacttaaataa |
32183060 |
T |
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| Q |
608 |
cttattcaatacacctttgaaaactaatgttaaatcataaacaacagattaccacatgtggagtcggcagcaattcatgtaaagctttgaggttatcagc |
707 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183059 |
cttattcaatacacctttgaaaactaatcttaaatcataaacaacagattaccacatgtggagtcggcagcaattcatgtaaagctttgaggttatcagc |
32182960 |
T |
|
| Q |
708 |
gatacgttgcctgcgttgctatattcaaagagtacagggtaagaaagaaacaaaattgtgttgatgaattggaataagattattaactagttgacaag-- |
805 |
Q |
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| T |
32182959 |
aatacgttgcctgcgttgctatattcaaagagtacacggtaagaaagaaacaaaattgtgttgatgaattggaataagattgttaactagttgacaagag |
32182860 |
T |
|
| Q |
806 |
---agcatagttttgaatttaatg--------------atatatctgcattttgaatgtggccgttatgattttatcagagatggaaaacgttttactta |
888 |
Q |
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|||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
32182859 |
catagcatagtattgaacttaatgatatcatatgtggtatatatctgcattttgaatgtggccgttatgattttatcagagatagaaaaccttttactta |
32182760 |
T |
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| Q |
889 |
cacggtcactgtaacgtgttttctcacttttctgttttgtggagctgcctcctgattttggatttggaagtaaagaaggtgcagcaactactcccatatg |
988 |
Q |
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| T |
32182759 |
cacggtcactgtaacgtgttttctcacttttctgttttgtggagctgcctcctgattttggatttggaagtaaagaaggtgcagcaactactcccatatg |
32182660 |
T |
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| Q |
989 |
atcaaattgtgaaccatattgcttatctccaacagaatcaggtgtccatgttgcatgaccctattacaaagttattacaataac |
1072 |
Q |
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| T |
32182659 |
atcaaattgtgaaccatattgcttatctccaacagaatcaggtgtccatgttgcatgaccctattacaaaattattacaataac |
32182576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 410 - 443
Target Start/End: Original strand, 32398798 - 32398831
Alignment:
| Q |
410 |
ctaatctaacaactaactactaatatttgccatt |
443 |
Q |
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| T |
32398798 |
ctaatctaacaactaattactaatatttgccatt |
32398831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 895 - 946
Target Start/End: Complemental strand, 51397539 - 51397488
Alignment:
| Q |
895 |
cactgtaacgtgttttctcacttttctgttttgtggagctgcctcctgattt |
946 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
51397539 |
cactgtaacgtgttttctcacttttctattttgtggtactgcctcctgattt |
51397488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 39260543 - 39260625
Alignment:
| Q |
20 |
agagtggcagcagttcttttctattattttaagcttaaggtttacgatgtacaacttgtatttacatatacaacggtctagatta |
104 |
Q |
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||||||| ||||||| ||| ||||||||||| |||||||||||| |||| |||||||||||| |||| ||||||||||||| |
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| T |
39260543 |
agagtggttgcagttcctttgtattattttaaacttaaggtttacattgtataacttgtatttaaatat--tacggtctagatta |
39260625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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