View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4384-Insertion-3 (Length: 957)
Name: NF4384-Insertion-3
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4384-Insertion-3 |
 | |
|
| [»] chr4 (15 HSPs) |
| |
|
| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 845; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 845; E-Value: 0
Query Start/End: Original strand, 8 - 957
Target Start/End: Complemental strand, 34777198 - 34776253
Alignment:
| Q |
8 |
gtaaacacctacttttgtagtagggaacaatgatctctatgaaaagaacaaatttgggaaattaatttgtaacaggaagtgataaatactattaacttga |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777198 |
gtaaacacctacttttgcagtagggaacaatgatctctatgaaaagaacaaatttgggaaattaatttgtaacaggaagtgataaatactattaacttga |
34777099 |
T |
|
| Q |
108 |
ctctctgaatcgaaaattattaattcggaatttataacattgcagcaacttcaggatcaaggataaacttcgatgagtgacttgaagccagaaatggggg |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777098 |
ctctctgaatcgaaacttattaattcggaatttataactttgcagcaacttcaggatcaaggataaacttcgatgagtgacttgaagccagaaatggggg |
34776999 |
T |
|
| Q |
208 |
taattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgttctttctttaccaagaaacattgtaagcatcaccaaatcata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776998 |
taattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgttctttctttaccaagaaacattgtaagcatcaccaaatcata |
34776899 |
T |
|
| Q |
308 |
gtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtcaatgataatcacttttccatcctttcctttgtgtgaaatagct |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776898 |
gtccaattgcaactcagttaatccccggtcatcacttgtttcatcaattgatatgtcaatgataatcacttttccatcctttcctttgtgtgaaatagct |
34776799 |
T |
|
| Q |
408 |
tctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaacccactgtgataaaagacaattgacatttaatttacttatttggt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34776798 |
tctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaacccactatgataaaagacaattgacatttaatttagttatttggt |
34776699 |
T |
|
| Q |
508 |
taatccaaaatatgcatcttaatttgttactagttactaccattttatccttattagcaaaagttatgtaacacagacacttcagattgaaggtaatgta |
607 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |||||||| |
|
|
| T |
34776698 |
taatccaaaata------ttaatttattactagttactaccattttatccttattagcaaaagttatgtagcagagacacttcggattgaaagtaatgta |
34776605 |
T |
|
| Q |
608 |
tcctacacattttaatgtctaacattatctcaacatggacacatgttaataaattgaaacaatttcattgactaaatttaattctggtgtctgtgtcatt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776604 |
tcctacacattttaatgtctaacattatctcaacacggacacatgttaataaattgaaacaatttcattgactaaatttaattctggtgtctgtgtcatt |
34776505 |
T |
|
| Q |
708 |
gtcaatattgtatccggtgtgtgcagtgtcagtgtctgtgtttcatagaccaaaattaaaatagtaacaattgttgaacatgcataccttaagtaaaaca |
807 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776504 |
gtcaatattgtgtccggtgtgtgcagtgtcagtgtctgtgcttcatagaccaaaattgaaatagtaacaattgttgaacatgcataccttaagtaaaaca |
34776405 |
T |
|
| Q |
808 |
gcatcagcagaagggatagatttgaacatatcaccaccaacaaagttcaaatcttcatttccagttaagttaccaacaacctgtggttgatc-aaaacag |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34776404 |
gcatcagcagaagggatagatttgaacatatctccaccaacaaagttcaaattttcatttccagttaagttaccaacaacctgtggttgatcaaaaacag |
34776305 |
T |
|
| Q |
907 |
tacatttaaggtgagg-aaaatttcatgaatgagttttgtaacaccaccagt |
957 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776304 |
tacatttaaggtgaggaaaaatttcatgaatgagttttgtaacaccaccagt |
34776253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 10 - 468
Target Start/End: Complemental strand, 34785370 - 34784904
Alignment:
| Q |
10 |
aaacacctacttttgt-agtagggaacaatgatctctatgaa----aagaacaaatttgggaaattaatttgtaacaggaagtgataaatactattaact |
104 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||| | |||||||| |||| ||||||||||| |||||||| ||||| |||||||| | |
|
|
| T |
34785370 |
aaacacctactttttttagtagggaacaatgatatctatatattcaaagaacaagtttgagaaattaatttccaacaggaaacaataaacactattaatt |
34785271 |
T |
|
| Q |
105 |
tgactctctgaatcgaaaattatt-aattcggaatttataac---attgcagcaacttcaggatcaaggataaacttcgatgagtgacttgaagccagaa |
200 |
Q |
| |
|
|||||||| ||| |||| ||||| ||||| | || ||||| ||| ||||||| | || ||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
34785270 |
tgactctccgaaaagaaacttattgaattcatagttcataacttgatttttgcaacttgaa-attaaggataaacttcaacgagagacttgaagccagaa |
34785172 |
T |
|
| Q |
201 |
atgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgttctttctttaccaagaaacattgtaagcatcacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34785171 |
atgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgttctttctttaccaaggaacattgtaagcatcacca |
34785072 |
T |
|
| Q |
301 |
aatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtcaatgataatcacttttccatcctttcctttgtgtga |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
34785071 |
aatcatattccaattgcaactcagttaatctacgatcatcacttgtttcatcaattgatatgtcaatgataatcacttttccatctttccctttatgtga |
34784972 |
T |
|
| Q |
401 |
aatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaacccact |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
34784971 |
aatagcttctttgctgttcttcaatatctttaaggataattcatcattccagtcatgcaaaacccact |
34784904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 772 - 903
Target Start/End: Complemental strand, 34784652 - 34784521
Alignment:
| Q |
772 |
taacaattgttgaacatgcataccttaagtaaaacagcatcagcagaagggatagatttgaacatatcaccaccaacaaagttcaaatcttcatttccag |
871 |
Q |
| |
|
||||||||| ||||||| |||||||| |||||||| || ||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
34784652 |
taacaattgatgaacatacataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaagttcaaattttcatttccag |
34784553 |
T |
|
| Q |
872 |
ttaagttaccaacaacctgtggttgatcaaaa |
903 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34784552 |
ttaagttaccaacaacctgtggttgatcaaaa |
34784521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 166 - 472
Target Start/End: Original strand, 11467270 - 11467576
Alignment:
| Q |
166 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
265 |
Q |
| |
|
||||||||||||| || || |||||||||||| | || || ||||| |||||||| || ||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
11467270 |
aaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattctttcttttc |
11467369 |
T |
|
| Q |
266 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtca |
365 |
Q |
| |
|
||||||||| ||| | | || | ||| |||| ||| ||| |||||| ||||| ||||| | || || |||||||||||||||||||||||||| |
|
|
| T |
11467370 |
tctttcttttccattatgtagagtcatcattaccatgtcaaagtgcaattgtaactcggttaactcacgatcttcacttgtttcatcaattgatatgtct |
11467469 |
T |
|
| Q |
366 |
atgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaaccc |
465 |
Q |
| |
|
||||| || | ||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
11467470 |
atgattattatctttcctttttttccttttcctgaaatagcttctttgctgttattcaatatctttaaggagagttcatcatcccaatcatgcaaaaccc |
11467569 |
T |
|
| Q |
466 |
actgtga |
472 |
Q |
| |
|
||||||| |
|
|
| T |
11467570 |
actgtga |
11467576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 166 - 472
Target Start/End: Complemental strand, 11524603 - 11524297
Alignment:
| Q |
166 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
265 |
Q |
| |
|
||||||||||||| || || |||||||||||| | || || ||||| ||||||||||| || || || ||||| |||||||| | |||||||| |||| |
|
|
| T |
11524603 |
aaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctttcttttc |
11524504 |
T |
|
| Q |
266 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtca |
365 |
Q |
| |
|
||||||||| ||| | || || | ||| |||| ||| ||| |||||||||||| |||||| | | ||||||||||||||||||||||||| ||| |
|
|
| T |
11524503 |
tctttcttttccattatgcagagtcatcattaccatgtcaaagtgcaattgcaactcggttaattcatgatcatcacttgtttcatcaattgatacgtct |
11524404 |
T |
|
| Q |
366 |
atgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaaccc |
465 |
Q |
| |
|
||||| || | ||||| | || ||||| ||||||||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
11524403 |
atgattattatctttccttttttcccttttcctgaaatagcttctttgcagttcttcaatatccttagggagagttcatcatcccaatcatgcagaaccc |
11524304 |
T |
|
| Q |
466 |
actgtga |
472 |
Q |
| |
|
||||||| |
|
|
| T |
11524303 |
actgtga |
11524297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 790 - 945
Target Start/End: Complemental strand, 11507828 - 11507671
Alignment:
| Q |
790 |
cataccttaagtaaaacagcatcagcagaagggatagatttgaacatatcaccaccaacaaagttcaaatcttcatttccagttaagttaccaacaacct |
889 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||| ||||| ||||| ||| || | ||||||| |
|
|
| T |
11507828 |
cataccttaagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccagataaattggccacaacct |
11507729 |
T |
|
| Q |
890 |
gtggttgatcaaa-acagtacatttaaggtgaggaaaa-tttcatgaatgagttttgt |
945 |
Q |
| |
|
||||||||||||| || || ||||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
11507728 |
gtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgt |
11507671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 790 - 944
Target Start/End: Original strand, 11468021 - 11468177
Alignment:
| Q |
790 |
cataccttaagtaaaacagcatcagcagaagggatagatttgaacatatcaccaccaacaaagttcaaatcttcatttccagttaagttaccaacaacct |
889 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| || | |||||| ||||||| | ||||||| |
|
|
| T |
11468021 |
cataccttgagtaaaacagcatctgcaggagggattgatttgaacatatctccaccaacaaagttcaaattttgagttccagataagttagccacaacct |
11468120 |
T |
|
| Q |
890 |
gtggttgatc-aaaacagtacatttaaggtgaggaaaat-ttcatgaatgagttttg |
944 |
Q |
| |
|
|||||||||| ||||| || ||||| | ||| ||||| | ||||||||||||||||| |
|
|
| T |
11468121 |
gtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttg |
11468177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 790 - 944
Target Start/End: Complemental strand, 11523440 - 11523284
Alignment:
| Q |
790 |
cataccttaagtaaaacagcatcagcagaagggatagatttgaacatatcaccaccaacaaagttcaaatcttcatttccagttaagttaccaacaacct |
889 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| || | |||||| ||||||| | ||||||| |
|
|
| T |
11523440 |
cataccttgagtaaaacagcatctgcaggagggattgatttgaacatatctccaccaacaaagttcaaattttgagttccagataagttagccacaacct |
11523341 |
T |
|
| Q |
890 |
gtggttgatc-aaaacagtacatttaaggtgaggaaaat-ttcatgaatgagttttg |
944 |
Q |
| |
|
|||||||||| ||||| || ||||| | ||| ||||| | ||||||||||||||||| |
|
|
| T |
11523340 |
gtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttg |
11523284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 792 - 945
Target Start/End: Complemental strand, 11548057 - 11547902
Alignment:
| Q |
792 |
taccttaagtaaaacagcatcagcagaagggatagatttgaacatatcaccaccaacaaagttcaaatcttcatttccagttaagttaccaacaacctgt |
891 |
Q |
| |
|
|||||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||| |||||| | ||||||||| |
|
|
| T |
11548057 |
taccttgagtaaaacagcatctgcaggagggatagatttgaacatatctccaccaacaaatttcaaattttcatctccagacaagttagccacaacctgt |
11547958 |
T |
|
| Q |
892 |
ggttgatcaaa-acagtacatttaaggtgaggaaaa-tttcatgaatgagttttgt |
945 |
Q |
| |
|
||||||||||| || || ||||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
11547957 |
ggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgt |
11547902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 792 - 945
Target Start/End: Original strand, 11445033 - 11445188
Alignment:
| Q |
792 |
taccttaagtaaaacagcatcagcagaagggatagatttgaacatatcaccaccaacaaagttcaaatcttcatttccagttaagttaccaacaacctgt |
891 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||| ||||| ||||| ||| || | ||||||||| |
|
|
| T |
11445033 |
taccttgagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccagataaattggccacaacctgt |
11445132 |
T |
|
| Q |
892 |
ggttgatcaaa-acagtacatttaaggtgaggaaaa-tttcatgaatgagttttgt |
945 |
Q |
| |
|
||||||||||| || || ||||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
11445133 |
ggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgt |
11445188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 168 - 469
Target Start/End: Complemental strand, 11508386 - 11508085
Alignment:
| Q |
168 |
ggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgttc |
267 |
Q |
| |
|
||||| ||||||||||| |||||||| || | || || ||||| || |||||||| |||||||| || |||||||||| |||||||||| ||| || |
|
|
| T |
11508386 |
ggatatacttcgatgagagacttgaaaccgcatataggtgtaatcttatagctgctgaaacctgcgtcgaatatgagtttctcccattctttcttctctc |
11508287 |
T |
|
| Q |
268 |
tttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtcaat |
367 |
Q |
| |
|
||||||| ||| |||| || | ||||| || ||| ||||||||| ||||||| || | | | | ||||||||||||||||||||||||||||| |
|
|
| T |
11508286 |
tttcttttccatttaacaaagtcatcatcatgaagtcaaagtccaatttcaactcatttgtttcatgattgtcacttgtttcatcaattgatatgtcaat |
11508187 |
T |
|
| Q |
368 |
gataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaacccac |
467 |
Q |
| |
|
||| ||||| ||||| || ||||| |||||||||| ||||| |||||||||||||||||| || | |||||||||||||||||||||| |||| |
|
|
| T |
11508186 |
gattatcacctttcccgttttcccttttcctgaaatagctgttttgcagttcttcaatatctttaaagagagatcatcattccaatcatgcagaatccac |
11508087 |
T |
|
| Q |
468 |
tg |
469 |
Q |
| |
|
|| |
|
|
| T |
11508086 |
tg |
11508085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 166 - 470
Target Start/End: Complemental strand, 11548730 - 11548426
Alignment:
| Q |
166 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
265 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | || || ||||| || |||||||| || ||||| || ||| ||||| |||||||||| ||| |
|
|
| T |
11548730 |
aaggataaacttcgatgatagacttgaagccgcatataggagtaatcttatagctgctgaagcctgcgtcgagtataagtttctcccattctttcttctc |
11548631 |
T |
|
| Q |
266 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtca |
365 |
Q |
| |
|
||||||||| ||| |||| || | ||||| |||||| ||||||||| ||||||| || | | | | ||||||||||| ||||||||||||||| |
|
|
| T |
11548630 |
tctttcttttccatttaacaaagtcatcatcatgaaatcaaagtccaatttcaactcatttgtttcatgattgtcacttgtttcgtcaattgatatgtca |
11548531 |
T |
|
| Q |
366 |
atgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaaccc |
465 |
Q |
| |
|
||||| ||||| ||||| | || ||||| ||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||| || || |
|
|
| T |
11548530 |
atgattatcacctttccttttttcccttttcctgaaatagcttttttgcaattctccaatatctttaaggacaattcatcattccaatcatgcaaaatcc |
11548431 |
T |
|
| Q |
466 |
actgt |
470 |
Q |
| |
|
||||| |
|
|
| T |
11548430 |
actgt |
11548426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 166 - 470
Target Start/End: Original strand, 11444378 - 11444682
Alignment:
| Q |
166 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
265 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | || || ||||| || |||||||| || ||||| || ||| ||||| |||||||||| ||| |
|
|
| T |
11444378 |
aaggataaacttcgatgatagacttgaagccgcatataggagtaatcttatagctgctgaagcctgcgtcgagtataagtttctcccattctttcttctc |
11444477 |
T |
|
| Q |
266 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtca |
365 |
Q |
| |
|
||||||||| ||| |||| || | ||||| |||||| ||||||||| ||||||| || | | | | ||||||||||||||||||||||||||| |
|
|
| T |
11444478 |
tctttcttttccatttaacaaagtcatcatcatgaaatcaaagtccaatttcaactcatttgtttcatgattgtcacttgtttcatcaattgatatgtca |
11444577 |
T |
|
| Q |
366 |
atgataatcacttttccatcctttcctttgtgtgaaatagcttctttgctgttcttcaatatctttaaggattgttcatcattccaatcatgcagaaccc |
465 |
Q |
| |
|
||||| ||||| ||||| | || ||||| ||||||||||| ||||| |||| |||||||||||||| ||| |||||||||||||||| || || |
|
|
| T |
11444578 |
atgattatcacctttccttttttcccttttcctgaaatagcttttttgcaattctctaatatctttaaggacaattcgtcattccaatcatgcaaaatcc |
11444677 |
T |
|
| Q |
466 |
actgt |
470 |
Q |
| |
|
||||| |
|
|
| T |
11444678 |
actgt |
11444682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 370
Target Start/End: Complemental strand, 11487927 - 11487725
Alignment:
| Q |
168 |
ggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgttc |
267 |
Q |
| |
|
||||||||||| |||||||||||||||||| | || || ||||| ||||||||||| || || || ||||| |||||||| | |||||||| |||| || |
|
|
| T |
11487927 |
ggataaacttctatgagtgacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctttcttttctc |
11487828 |
T |
|
| Q |
268 |
tttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactcagttaatccgcggtcatcacttgtttcatcaattgatatgtcaat |
367 |
Q |
| |
|
||||||| ||| | || || | ||| |||| ||| ||| |||||||||||| |||||| | | ||||||||||||||||||||||||| ||| || |
|
|
| T |
11487827 |
tttcttttccattatgcagagtcatcattaccatgtcaaagtgcaattgcaactcggttaattcatgatcatcacttgtttcatcaattgatacgtctat |
11487728 |
T |
|
| Q |
368 |
gat |
370 |
Q |
| |
|
||| |
|
|
| T |
11487727 |
gat |
11487725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 323
Target Start/End: Original strand, 11441502 - 11441659
Alignment:
| Q |
166 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
265 |
Q |
| |
|
|||||||||||||||||| || |||||||| | || || ||||| || |||||||| || ||||| || |||||||||| |||||||||| ||| |
|
|
| T |
11441502 |
aaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctttcttctc |
11441601 |
T |
|
| Q |
266 |
tctttctttaccaagaaacattgtaagcatcaccaaatcatagtccaattgcaactca |
323 |
Q |
| |
|
||||||||| ||| |||| || | ||||| |||||| ||||||||| ||||||| |
|
|
| T |
11441602 |
tctttcttttccatttaacaaagtcatcatcatgaaatcaaagtccaatttcaactca |
11441659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 799 - 945
Target Start/End: Complemental strand, 2476 - 2328
Alignment:
| Q |
799 |
agtaaaacagcatcagcagaagggatagatttgaacatatcaccaccaacaaagttcaaatcttcatttccagttaagttaccaacaacctgtggttgat |
898 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||| ||||| ||||| ||| || | |||||||||||||||| |
|
|
| T |
2476 |
agtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccagataaattggccacaacctgtggttgat |
2377 |
T |
|
| Q |
899 |
caaa-acagtacatttaaggtgaggaaaa-tttcatgaatgagttttgt |
945 |
Q |
| |
|
|||| || || ||||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
2376 |
caaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgt |
2328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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