View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4384-Insertion-4 (Length: 586)

Name: NF4384-Insertion-4
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4384-Insertion-4
NF4384-Insertion-4
[»] chr5 (6 HSPs)
chr5 (8-586)||(5346195-5346773)
chr5 (451-581)||(41191549-41191679)
chr5 (449-489)||(2029057-2029097)
chr5 (451-489)||(27345929-27345967)
chr5 (451-489)||(39937916-39937954)
chr5 (445-489)||(39936249-39936293)
[»] chr4 (7 HSPs)
chr4 (446-586)||(49933288-49933423)
chr4 (449-489)||(14527586-14527626)
chr4 (451-489)||(13924793-13924831)
chr4 (451-489)||(21527035-21527073)
chr4 (451-489)||(24666129-24666167)
chr4 (450-488)||(34941501-34941539)
chr4 (452-489)||(20143280-20143317)
[»] chr3 (6 HSPs)
chr3 (448-586)||(36539030-36539168)
chr3 (451-489)||(20807937-20807975)
chr3 (451-489)||(47571196-47571234)
chr3 (451-489)||(49349676-49349714)
chr3 (452-489)||(54308454-54308491)
chr3 (445-489)||(53344751-53344795)
[»] chr2 (2 HSPs)
chr2 (445-581)||(6874219-6874355)
chr2 (449-489)||(29388958-29388998)
[»] chr8 (6 HSPs)
chr8 (165-278)||(26049343-26049455)
chr8 (451-489)||(16911056-16911094)
chr8 (449-489)||(42094007-42094047)
chr8 (445-489)||(42094754-42094798)
chr8 (450-489)||(22632978-22633017)
chr8 (452-489)||(22632323-22632360)
[»] chr1 (6 HSPs)
chr1 (450-489)||(26240113-26240152)
chr1 (450-489)||(26240881-26240920)
chr1 (455-489)||(14166917-14166951)
chr1 (451-489)||(16449555-16449593)
chr1 (451-489)||(16459129-16459167)
chr1 (449-489)||(24848436-24848476)
[»] chr7 (6 HSPs)
chr7 (451-489)||(3315473-3315511)
chr7 (444-489)||(28007150-28007195)
chr7 (445-489)||(767130-767174)
chr7 (451-487)||(17114145-17114181)
chr7 (453-489)||(44876944-44876980)
chr7 (445-489)||(46491004-46491048)


Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 586
Target Start/End: Complemental strand, 5346773 - 5346195
Alignment:
Q  8 ggttgttggtatgttaatcagtccatgttgacaatttagttcattcgccgacccaagatnnnnnnnntgctcgtagaacaaatttgtatgtatggtttca 107  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||        ||||| |||||||||||||||||||||||||||    
T  5346773 ggttgttggtatgttaataagtccatgttgacaatt-agttcattcgctgacccaagataaaaaaa-tgctcatagaacaaatttgtatgtatggtttca 5346676  T
Q  108 cgcccgtaagtgggtttgctaggtaatgcatgtgatgtgtgtacatttgcttctatttcttttcaaccacttttgttgtatttggattgcttgtatacac 207  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  5346675 cgcctgtaagtgggtttgctggataatgcatgtgatgtgtgtacatttgcttctgtttcttttcaaccacttttgttgtatttggattgcttgcatacac 5346576  T
Q  208 gtttgggctgattaagtgctttaactgagttaggtatatgtccttcaatattttgtattatcttttattttcctcttaaaatatttaggattgtagagga 307  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  5346575 gtttgggctgattaagtgctttaactaagttaggtatatgtccttcaatattttgtattatcttttattttcatcttaaaatatttagggttgtagagga 5346476  T
Q  308 ttttacatctgcaccgcatttgtttnnnnnnnttaaaatatatgataattagtcgttgaagtagctcataaatttaaaatggca-aaaatatat-gnnnn 405  Q
    |||| ||||||||||||||||| ||       ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||          
T  5346475 ttttccatctgcaccgcatttgcttaaaaaaattaaaatatatgataattagtcgttgatgtagctcataaatttaaaatggcataaagtatatattttt 5346376  T
Q  406 nnnnaattatatatcatatataaggcataaattatatgcttttaaggtggattctagggtgagggctcacttaagtccctcacctaaaatatggagggac 505  Q
        |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  5346375 ttttaattatatatgatttataaggcataaagtatatgcttttaaggtggattctagggtgagggctcacttaagtccctcgcctaaaatatggatggac 5346276  T
Q  506 catcattaaaagccattagatgaaggaacttatgagattgtatcatgtgttagccacacaagattggacccaacaaattct 586  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5346275 catcattaaaagtcattagatgaaggaacttatgagattgtatcatgtgttagccacactagattggacccaacaaattct 5346195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 451 - 581
Target Start/End: Original strand, 41191549 - 41191679
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacctaaaatatggagggaccatcattaaaagccattagatgaaggaacttatgagattgtatca 550  Q
    ||||| ||||||||||||||||||  || ||||||| || |||  |||    |||| | ||||||||||||||||||||||||||||| |||| ||||||    
T  41191549 ggtggcttctagggtgagggctcaactatgtccctcgcccaaagaatgagttgaccgtgattaaaagccattagatgaaggaacttataagatggtatca 41191648  T
Q  551 tgtgttagccacacaagattggacccaacaa 581  Q
    |||| || |||||| |||| |||||||||||    
T  41191649 tgtggtatccacaccagatcggacccaacaa 41191679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 2029097 - 2029057
Alignment:
Q  449 aaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  2029097 aaggtggattctagggtgagggctcaattaagtccctcacc 2029057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 27345967 - 27345929
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcacc 27345929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 39937954 - 39937916
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcacc 39937916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 39936249 - 39936293
Alignment:
Q  445 ttttaaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||| |||||||||||| |||||||| ||| ||||||||||||||    
T  39936249 tttttaggtggattctaaggtgagggttcaattaagtccctcacc 39936293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 446 - 586
Target Start/End: Complemental strand, 49933423 - 49933288
Alignment:
Q  446 tttaaggtggattctagggtgagggctcacttaagtccctcacctaaaatatggagggaccatcattaaaagccattagatgaaggaacttatgagattg 545  Q
    |||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||| |||||||||||||||    
T  49933423 tttagggtagattctagggtaagggttcacttaagtccctcacctaaaatatgggtggaccatcattaaaagctattagatgaaagaacttatgagattg 49933324  T
Q  546 tatcatgtgttagccacacaagattggacccaacaaattct 586  Q
    |||||||||||||||     |||||||||||||||||||||    
T  49933323 tatcatgtgttagcc-----agattggacccaacaaattct 49933288  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 14527626 - 14527586
Alignment:
Q  449 aaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  14527626 aaggtggattctagggtgagggatcaattaagtccctcacc 14527586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 13924793 - 13924831
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcacc 13924831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 21527073 - 21527035
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  21527073 ggtggattctagggtgagggctctattaagtccctcacc 21527035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 24666129 - 24666167
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctcacc 24666167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 488
Target Start/End: Original strand, 34941501 - 34941539
Alignment:
Q  450 aggtggattctagggtgagggctcacttaagtccctcac 488  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  34941501 aggtggattctagggtgagggttcaattaagtccctcac 34941539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 20143280 - 20143317
Alignment:
Q  452 gtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||||||  |||||||||||||    
T  20143280 gtggattctagggtgagggctcaactaagtccctcacc 20143317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 448 - 586
Target Start/End: Original strand, 36539030 - 36539168
Alignment:
Q  448 taaggtggattctagggtgagggctcacttaagtccctcacctaaaatatggagggaccatcattaaaagccattagatgaaggaacttatgagattgta 547  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||||||| ||  ||||||||||||||||||||||||| |||||| | || ||||||||    
T  36539030 taaggtgaattctagggtgaggactcacttaagttcctcatctaaaataagggtggaccatcattaaaagccattagataaaggaattcatcagattgta 36539129  T
Q  548 tcatgtgttagccacacaagattggacccaacaaattct 586  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  36539130 tcatgtgttagccacactagattggatccaacaaattct 36539168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 20807937 - 20807975
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcacc 20807975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 47571196 - 47571234
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctcacc 47571234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 49349676 - 49349714
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcacc 49349714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 54308454 - 54308491
Alignment:
Q  452 gtggattctagggtgagggctcacttaagtccctcacc 489  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcacc 54308491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 53344795 - 53344751
Alignment:
Q  445 ttttaaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||| ||||||||||||||||||||| ||| | ||||||||||||    
T  53344795 ttttgaggtggattctagggtgagggatcaatcaagtccctcacc 53344751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 445 - 581
Target Start/End: Complemental strand, 6874355 - 6874219
Alignment:
Q  445 ttttaaggtggattctagggtgagggctcacttaagtccctcacctaaaatatggagggaccatcattaaaagccattagatgaaggaacttatgagatt 544  Q
    |||||||||| ||| ||||||||||| |||  ||| ||||||||||||||| ||   ||||||| ||||||||||||||||||||| ||||||||||||     
T  6874355 ttttaaggtgaattttagggtgagggttcaactaaatccctcacctaaaatttgagtggaccataattaaaagccattagatgaagaaacttatgagatg 6874256  T
Q  545 gtatcatgtgttagccacacaagattggacccaacaa 581  Q
    |||||||||| |||||||||  ||| | |||||||||    
T  6874255 gtatcatgtggtagccacactggatcgaacccaacaa 6874219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 29388998 - 29388958
Alignment:
Q  449 aaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||| ||||||||||||||  ||||||||||||||    
T  29388998 aaggtggattttagggtgagggctctattaagtccctcacc 29388958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 26049455 - 26049343
Alignment:
Q  165 tcttttcaaccacttttgttgtatttggattgcttgtatacacgtttgggctgattaagtgctttaactgagttaggtatatgtccttcaatattttgta 264  Q
    |||||| ||||||||||||||||||||||||| ||||| || |||||||||| |||| ||| ||| |||| |||||||||||| || | | ||| |||||    
T  26049455 tcttttgaaccacttttgttgtatttggattggttgtacacccgtttgggctaattacgtggtttgactgggttaggtatatg-ccctaagtatcttgta 26049357  T
Q  265 ttatcttttatttt 278  Q
    || |||||||||||    
T  26049356 ttttcttttatttt 26049343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 16911094 - 16911056
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  16911094 ggtggattctagggtgagggctcaattaagtccctcacc 16911056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 489
Target Start/End: Original strand, 42094007 - 42094047
Alignment:
Q  449 aaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  42094007 aaggtggattctagggtgagggatcaattaagtccctcacc 42094047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 42094798 - 42094754
Alignment:
Q  445 ttttaaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||    
T  42094798 ttttaaggtgaattctagggtgagggatcaattaagtccctcacc 42094754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 489
Target Start/End: Complemental strand, 22633017 - 22632978
Alignment:
Q  450 aggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  22633017 aggtggattctagggtgagggatcaattaagtccctcacc 22632978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 22632323 - 22632360
Alignment:
Q  452 gtggattctagggtgagggctcacttaagtccctcacc 489  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcacc 22632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 489
Target Start/End: Original strand, 26240113 - 26240152
Alignment:
Q  450 aggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  26240113 aggtggattctagggtgagggatcaattaagtccctcacc 26240152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 489
Target Start/End: Complemental strand, 26240920 - 26240881
Alignment:
Q  450 aggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  26240920 aggtggattctagggtgagggttcaattaagtccctcacc 26240881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 489
Target Start/End: Complemental strand, 14166951 - 14166917
Alignment:
Q  455 gattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||| ||||||||||||||    
T  14166951 gattctagggtgagggctcaattaagtccctcacc 14166917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 16449555 - 16449593
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcacc 16449593  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 16459129 - 16459167
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcacc 16459167  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 24848476 - 24848436
Alignment:
Q  449 aaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||||||| ||  ||||||||||||||    
T  24848476 aaggtggattctagggtgagggttctattaagtccctcacc 24848436  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 3315511 - 3315473
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  3315511 ggtggattctaaggtgagggctcaattaagtccctcacc 3315473  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 489
Target Start/End: Original strand, 28007150 - 28007195
Alignment:
Q  444 cttttaaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    ||||| |||||||||||||||||||||  || ||||||||||||||    
T  28007150 ctttttaggtggattctagggtgagggagcaattaagtccctcacc 28007195  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 767130 - 767174
Alignment:
Q  445 ttttaaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    ||||| ||||||||||||||||||||  || ||||||||||||||    
T  767130 ttttacggtggattctagggtgagggtccaattaagtccctcacc 767174  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 17114145 - 17114181
Alignment:
Q  451 ggtggattctagggtgagggctcacttaagtccctca 487  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  17114145 ggtggattctagggtgagggttcaattaagtccctca 17114181  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 44876980 - 44876944
Alignment:
Q  453 tggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  44876980 tggattctagggtgagggatcaattaagtccctcacc 44876944  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 46491004 - 46491048
Alignment:
Q  445 ttttaaggtggattctagggtgagggctcacttaagtccctcacc 489  Q
    |||||||||||||| ||||||||||| ||| |||||||| |||||    
T  46491004 ttttaaggtggattgtagggtgagggttcaattaagtccatcacc 46491048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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