View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4384-Insertion-5 (Length: 585)

Name: NF4384-Insertion-5
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4384-Insertion-5
NF4384-Insertion-5
[»] chr4 (9 HSPs)
chr4 (7-585)||(4599648-4600224)
chr4 (270-585)||(4623976-4624295)
chr4 (7-183)||(4624296-4624472)
chr4 (466-581)||(25038173-25038291)
chr4 (251-387)||(25017293-25017429)
chr4 (28-191)||(25038631-25038791)
chr4 (466-581)||(25017068-25017186)
chr4 (120-197)||(25017518-25017595)
chr4 (251-384)||(25038397-25038530)
[»] chr2 (3 HSPs)
chr2 (421-582)||(18804667-18804828)
chr2 (17-187)||(18804099-18804269)
chr2 (253-393)||(18804346-18804486)


Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 7 - 585
Target Start/End: Complemental strand, 4600224 - 4599648
Alignment:
Q  7 attttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaatgagccattctcttattgtttgagtacatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4600224 attttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaatgagccattctcttattgtttgagtacatc 4600125  T
Q  107 acatcgttacaaagccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacactaaaaattagtaata 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4600124 acatcgttacaaagccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacactaaaaattagtaata 4600025  T
Q  207 gataacnnnnnnngttatgattgttcaaaaatttacttatcttcaattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctca 306  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4600024 gataactttttttgttatgattgttcaaaaatttacttatcttcaattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctca 4599925  T
Q  307 ctggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgatttcatgtttggatggtaatgactatacnnnnnnnaccgt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||       ||| |    
T  4599924 ctggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgatttcatgtttggatggtaatgac--tactttttttacctt 4599827  T
Q  407 ttctacgacaaccatggatcgcgacaaaattgtgacggtaatttaaaatcttctttatctgtttgaaggtttatacagccactgacaaccggagagtatc 506  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4599826 ttctacgacaaccatggatcacgacaaaattgtgacggtaatttaaaatcttctttatctgtttgcaggtttatacagccactgacaaccggagagtatc 4599727  T
Q  507 cagcaagcatggtgtctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattgggtcatatga 585  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4599726 cagcaaacatggtgtctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattgggtcatatga 4599648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 270 - 585
Target Start/End: Complemental strand, 4624295 - 4623976
Alignment:
Q  270 ctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgattt 369  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| | |||  ||||||||||||    
T  4624295 ctcaaaatggtgtaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgctgaagacgcccttgattt 4624196  T
Q  370 catgtttggatggtaatgactatacnnnnnnnaccgtttctacgacaaccatggatcgcgacaaaattgtgacggta--atttaaaatcttctttatctg 467  Q
    ||||||||||||||||  |||||||       ||||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  4624195 catgtttggatggtaacaactatactttttg-accgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttaaaatcttctttatctg 4624097  T
Q  468 tttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtgaaagat---ttaccaaagttcactgaagagcaatctaa 564  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||  |||  ||||    ||||||||||||||| ||||||||||||    
T  4624096 tttgcaggtttatacagccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagctaccaaagttcactgcagagcaatctaa 4623997  T
Q  565 aagtcttattgggtcatatga 585  Q
     ||||||||||||||||||||    
T  4623996 gagtcttattgggtcatatga 4623976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 4624472 - 4624296
Alignment:
Q  7 attttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaatgagccattctcttattgtttgagtacatc 106  Q
    ||||||||||||||||||| ||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  4624472 attttaaggactttgtggatatatgcttcaaggaatttggagacagtgtaaagcattgggttacttttaatgagccattctcttacactttgagtacatc 4624373  T
Q  107 acatcgttacaaagccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcagg 183  Q
    | || | |||||  |||||||||||||||||||| ||||||||| |||| |||||||||||||||||| ||||||||    
T  4624372 agattggtacaagtccacacacaaccaacttcttgctcatgcagatgttttcgaattgtataaaaccacatatcagg 4624296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 466 - 581
Target Start/End: Complemental strand, 25038291 - 25038173
Alignment:
Q  466 tgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtg---aaagatttaccaaagttcactgaagagcaatct 562  Q
    |||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||||  |||   ||   |||||||||||||||   ||||||||||    
T  25038291 tgtttgtaggtttatgcagccactgacaacaggagagtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccagagagcaatct 25038192  T
Q  563 aaaagtcttattgggtcat 581  Q
    || | ||||||||| ||||    
T  25038191 aagattcttattggctcat 25038173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 251 - 387
Target Start/End: Complemental strand, 25017429 - 25017293
Alignment:
Q  251 aattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagcca 350  Q
    ||||||||| |||||  ||||||||| |||  |||||||||  | |||| |||||||||||||   |||| |||||   || |||||||||| |||||      
T  25017429 aattaatggcagcagtcttctcaaaatggttcaataggcatcagcttaagctctcactggtttctgccgttctcaaatcacacattagatcatcaagctg 25017330  T
Q  351 ccgaacgcgcccttgatttcatgtttggatggtaatg 387  Q
    ||||||| || ||||||| ||||||||||||||||||    
T  25017329 ccgaacgtgctcttgattacatgtttggatggtaatg 25017293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 25038791 - 25038631
Alignment:
Q  28 tatgcttccaagaatttggagatagagtaaagcattgggttacttttaatgagccattctcttattgtttgagtacatcacatcgttacaaagccacaca 127  Q
    |||||||| | ||||| ||||||||||| ||||||||| |||| || |||||||||  ||||||  ||||| ||   ||| | | |||||  | | ||||    
T  25038791 tatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagccacactcttacagtttgggt---tcagaaccttacatcgtctcaca 25038695  T
Q  128 caaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacac 191  Q
    ||||||||| ||| |||||||||||| |||| || | |||| ||||||  ||||||||||||||    
T  25038694 caaccaactccttgctcatgcagctgctgtcaaactttatagaaccaatcatcaggtgcaacac 25038631  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 581
Target Start/End: Complemental strand, 25017186 - 25017068
Alignment:
Q  466 tgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtcttt--cgtgaaa-gatttaccaaagttcactgaagagcaatct 562  Q
    |||||| |||||||| |||||| |||| || ||||||||||||  |||||||||||||||  || ||||   |||||||||||||||  |||||||||||    
T  25017186 tgtttgcaggtttatgcagccattgaccacaggagagtatccattaagcatggtgtcttttgcgggaaatcgtttaccaaagttcaccaaagagcaatct 25017087  T
Q  563 aaaagtcttattgggtcat 581  Q
    || |  |||||||| ||||    
T  25017086 aagatgcttattggctcat 25017068  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 25017595 - 25017518
Alignment:
Q  120 gccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacactaaaaa 197  Q
    ||||||||||||||||| ||| |||||||||||| |||| || | |||| ||||||  | ||||||||||||| ||||    
T  25017595 gccacacacaaccaactccttgctcatgcagctgctgtcaaaatttatagaaccaatcaccaggtgcaacactgaaaa 25017518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 251 - 384
Target Start/End: Complemental strand, 25038530 - 25038397
Alignment:
Q  251 aattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagcca 350  Q
    ||||||||| | |||| ||||||||| |||  |||||||||    ||||| | ||||||||||   |||| |||||  ||| | |||||||| |||||      
T  25038530 aattaatggcatcaggcttctcaaaatggttcaataggcatcaccttaaattgtcactggtttttgccgttctcaaatgacacgttagatcatcaagctt 25038431  T
Q  351 ccgaacgcgcccttgatttcatgtttggatggta 384  Q
    ||||||| || |||||||||||||||||||||||    
T  25038430 ccgaacgtgctcttgatttcatgtttggatggta 25038397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 421 - 582
Target Start/End: Original strand, 18804667 - 18804828
Alignment:
Q  421 tggatcgcgacaaaattgtgacggtaatttaaaatcttctttatctgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtg 520  Q
    |||||| ||||| ||||| | | |||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||| |||||||||||||||    
T  18804667 tggatcacgacataattgcggcagtaatttaaaatcttctttatctgtttgcaggtttttacaaccactgacaacaggagagtacccagcaagcatggtg 18804766  T
Q  521 tctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattgggtcata 582  Q
    |||    || ||   ||||||||||||||| ||||||||| | | |||||||||||||||||    
T  18804767 tctaatttggaaacattaccaaagttcactaaagagcaatatgagagtcttattgggtcata 18804828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 18804099 - 18804269
Alignment:
Q  17 ctttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaatgagccattctcttattgtttgagtacatcacatcgttac 116  Q
    |||||||||| |||||||| | ||||||||||| |||||||| |||||| ||||| |||||||||||| || ||| | |  |||||||  | |||    |    
T  18804099 ctttgtggaggtatgcttcgaggaatttggagacagagtaaatcattggattactcttaatgagccatacttttactctacgagtacaaaatatcccctc 18804198  T
Q  117 aaagccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgca 187  Q
       ||| |||| |||| ||||||  |||||||||||| |||| ||||||||||||| || |||||||||||    
T  18804199 gtggccgcacaaaacctacttctcgctcatgcagctgctgtcaaattgtataaaacaaattatcaggtgca 18804269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 393
Target Start/End: Original strand, 18804346 - 18804486
Alignment:
Q  253 ttaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccacc 352  Q
    ||||||| |||||| ||||||||| ||| ||||||||||   |||||||| |  |||||||   ||| | |||    |||| |||||||| |||||  ||    
T  18804346 ttaatggaagcaggcttctcaaaagggtataataggcatcacattaaactgtacctggtttttgccgcaatcagataacccgttagatcatcaagctgcc 18804445  T
Q  353 gaacgcgcccttgatttcatgtttggatggtaatgactata 393  Q
    ||||| |||||||||||  || |||||||||||||||||||    
T  18804446 gaacgtgcccttgatttattgcttggatggtaatgactata 18804486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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