View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4384-Insertion-7 (Length: 487)
Name: NF4384-Insertion-7
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4384-Insertion-7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Complemental strand, 40651858 - 40651377
Alignment:
| Q |
8 |
ttagcgtgcggtggttcaatgcccacagtgaaaacaa-caccttagtaatgtgttagctttgttttgaccttagctttaacggaacgttgaaagactaaa |
106 |
Q |
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| T |
40651858 |
ttagcgtgcggtggttcaatgcccacagtgaaaaaaaacaccttagtaatgtgttagctttgttttgaccttagctttaacggaacgttgaaagactaaa |
40651759 |
T |
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| Q |
107 |
gtaggtgtgtatg--tgcacgcgcgcgcatgcatatatgtggttgctgtagggtggcttagctttgtgtcgagttataaaaaagaatgagaagagcaaga |
204 |
Q |
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| T |
40651758 |
gtaggtgtgtgtgcgtgcacgcgcgcacatgcatatatgtggttgctgtagggtggcttagctttgtgtcgagttataaaaaagaatgagaagagcaaga |
40651659 |
T |
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| Q |
205 |
gggttgcaacaagttccatcaatggaagtgagacctcaatgagattctcaagtgatgtttcttctcaagcaagtcacctgaataatggatcacaaaatgt |
304 |
Q |
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| T |
40651658 |
gggttgcaacaagttccatcaatggaagtgagacctcaatgagattctcaagtgatgtttcttctcaagcaagtcacctgaataatggatcacaaaatgt |
40651559 |
T |
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| Q |
305 |
ggctacaattgctgagtttaaccatgtttccatagaaacaaatccttcaaccttctggatctcccctgatatgattcttgattcttcaaaggtatatatt |
404 |
Q |
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| T |
40651558 |
ggctacaattgctgagtttaaccatgtttccatagaaacaaatccttcaaccttctggatctcccctgatatgattcttgattcttcaaaggtatatatt |
40651459 |
T |
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| Q |
405 |
ttttaattttattcattattatcatatgtaacaaattaggaaatatgtgattgaatggctataatttggagacgttaccgaca |
487 |
Q |
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| T |
40651458 |
ttttaattttattcattattatcatatg-aacaaattaggaaatatgtgattgaatggctataatttggagacgttaccgaca |
40651377 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 4777572 - 4777625
Alignment:
| Q |
345 |
aatccttcaaccttctggatctcccctgatatgattcttgattcttcaaaggta |
398 |
Q |
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|||||| |||| |||||| | |||||||| |||||||||||||||||||||||| |
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| T |
4777572 |
aatcctacaacattctggctgtcccctgacatgattcttgattcttcaaaggta |
4777625 |
T |
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