View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4384-Insertion-8 (Length: 408)

Name: NF4384-Insertion-8
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4384-Insertion-8
NF4384-Insertion-8
[»] chr2 (11 HSPs)
chr2 (134-343)||(40994518-40994727)
chr2 (8-96)||(40994432-40994520)
chr2 (362-408)||(40994767-40994813)
chr2 (363-408)||(9547400-9547445)
chr2 (363-408)||(29896285-29896330)
chr2 (370-408)||(5028881-5028919)
chr2 (370-408)||(12126894-12126932)
chr2 (363-408)||(12599856-12599901)
chr2 (362-395)||(39340239-39340272)
chr2 (363-403)||(42451463-42451503)
chr2 (364-404)||(42886869-42886909)
[»] chr1 (14 HSPs)
chr1 (363-408)||(23979407-23979452)
chr1 (363-407)||(15670633-15670677)
chr1 (363-408)||(16924503-16924548)
chr1 (363-408)||(43356460-43356505)
chr1 (364-408)||(13401622-13401666)
chr1 (368-408)||(43611449-43611489)
chr1 (363-408)||(8269359-8269404)
chr1 (363-408)||(24571616-24571661)
chr1 (363-408)||(27533268-27533313)
chr1 (363-408)||(34899617-34899662)
chr1 (363-395)||(8872898-8872930)
chr1 (363-407)||(24978270-24978314)
chr1 (363-407)||(33382249-33382293)
chr1 (363-403)||(49196377-49196417)
[»] chr7 (12 HSPs)
chr7 (362-408)||(38780005-38780051)
chr7 (363-404)||(7994875-7994916)
chr7 (368-403)||(45151407-45151442)
chr7 (362-408)||(5526750-5526796)
chr7 (363-408)||(7388030-7388075)
chr7 (363-408)||(26920705-26920750)
chr7 (363-408)||(27833392-27833437)
chr7 (363-408)||(31414123-31414168)
chr7 (363-408)||(46849098-46849143)
chr7 (363-403)||(5579723-5579763)
chr7 (368-408)||(25251535-25251575)
chr7 (363-395)||(44651539-44651571)
[»] chr3 (10 HSPs)
chr3 (366-408)||(2186421-2186463)
chr3 (371-408)||(55395323-55395360)
chr3 (365-408)||(1111834-1111877)
chr3 (362-408)||(35392028-35392074)
chr3 (363-408)||(7464482-7464527)
chr3 (363-408)||(17755146-17755191)
chr3 (363-408)||(19056466-19056511)
chr3 (363-408)||(27185502-27185547)
chr3 (363-408)||(48209202-48209247)
chr3 (363-403)||(14030726-14030766)
[»] chr6 (5 HSPs)
chr6 (363-408)||(15169956-15170001)
chr6 (363-408)||(15178728-15178773)
chr6 (363-408)||(24623308-24623353)
chr6 (365-407)||(9311923-9311965)
chr6 (363-403)||(4455587-4455627)
[»] chr4 (5 HSPs)
chr4 (363-408)||(22164260-22164305)
chr4 (362-408)||(32268106-32268152)
chr4 (366-408)||(50668365-50668407)
chr4 (363-403)||(17729456-17729496)
chr4 (363-403)||(18903749-18903789)
[»] chr8 (6 HSPs)
chr8 (363-408)||(12800891-12800936)
chr8 (363-408)||(27571840-27571885)
chr8 (363-408)||(37570745-37570789)
chr8 (363-408)||(44632176-44632221)
chr8 (363-403)||(3650550-3650590)
chr8 (363-403)||(7996970-7997010)
[»] chr5 (9 HSPs)
chr5 (363-408)||(13864369-13864414)
chr5 (363-408)||(18999974-19000019)
chr5 (363-408)||(29695040-29695085)
chr5 (363-408)||(37884688-37884733)
chr5 (363-404)||(41266415-41266456)
chr5 (363-403)||(1809074-1809114)
chr5 (362-402)||(19647498-19647538)
chr5 (363-407)||(26675937-26675981)
chr5 (363-407)||(26947545-26947589)
[»] scaffold0111 (1 HSPs)
scaffold0111 (363-395)||(39422-39454)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 134 - 343
Target Start/End: Original strand, 40994518 - 40994727
Alignment:
Q  134 taacatgatcttatttatataaatctccttagtagaattttcaacctggggaggatgttgaactcctatcctttgtttatttcaattgggtaaagtattg 233  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40994518 taacatgatcttatttatataaatctccttaatagaattttcaacctggggaggatgttgaactcctatcctttgtttatttcaattgggtaaagtattg 40994617  T
Q  234 ttcccctatatgttttacagattgattttctatctaggagattttttagatgatggactaaatattgatatctttagtatataaaagagagtatcctaac 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40994618 ttcccctatatgttttacagattgattttctatctaggagattttttagatgatggactaaatattgatatctttagtatacaaaagagagtatcctaac 40994717  T
Q  334 ccaatttata 343  Q
     |||||||||    
T  40994718 acaatttata 40994727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 40994432 - 40994520
Alignment:
Q  8 aatacaaacatcattaagcccttgatgagtttacccttttaatactacaaaggctttctcactcacattaagtggagaccaaaaattaa 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40994432 aatacaaacatcattaagcccttgatgagtttacccttttaatactacaaaggctttctcactcacattaagtgaagaccaaaaattaa 40994520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 40994767 - 40994813
Alignment:
Q  362 atggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  40994767 atggtggtcggtgtttgaaccccgaaccttgcatctattatgtattg 40994813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 9547400 - 9547445
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  9547400 tggtggtcggggtttgaaccccaaaccttgcatatattatgcattg 9547445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 29896285 - 29896330
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  29896285 tggtggtcggggtttgaaccccaaaccttgcatatattatgcattg 29896330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 5028919 - 5028881
Alignment:
Q  370 cggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  5028919 cggggtttgaaccccaaaccttacatatattatgcattg 5028881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 12126932 - 12126894
Alignment:
Q  370 cggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  12126932 cggggtttgaacctcaaaccttacatatattatgtattg 12126894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 12599856 - 12599901
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||| |||||||| ||||| ||| ||||||||||||    
T  12599856 tggtggtcggggttcgaaccccagaccttgcatatattatgtattg 12599901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 39340239 - 39340272
Alignment:
Q  362 atggtggtcggggtttgaaccccaaaccttacat 395  Q
    ||||||||||||||| ||||||||||||||||||    
T  39340239 atggtggtcggggttcgaaccccaaaccttacat 39340272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 42451503 - 42451463
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    |||||||||| ||||||||| |||||||||||| |||||||    
T  42451503 tggtggtcggagtttgaacctcaaaccttacatatattatg 42451463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 42886869 - 42886909
Alignment:
Q  364 ggtggtcggggtttgaaccccaaaccttacatctattatgt 404  Q
    ||||||||||||||||| |||||||||||||| | ||||||    
T  42886869 ggtggtcggggtttgaaacccaaaccttacatattttatgt 42886909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 23979407 - 23979452
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||    
T  23979407 tggtggtcggggtttgaaccccaaaccatacatatattatgtattg 23979452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 15670633 - 15670677
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 407  Q
    |||| |||||||||||||||||||||||||||| |||||||||||    
T  15670633 tggtagtcggggtttgaaccccaaaccttacatatattatgtatt 15670677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 16924548 - 16924503
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  16924548 tggtggtcgaggtttgaaccccaaatcttacatatattatgtattg 16924503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 43356505 - 43356460
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  43356505 tggtggtcggggtttgaactccaaaccttacatatattatgcattg 43356460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 13401666 - 13401622
Alignment:
Q  364 ggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||||    
T  13401666 ggtggtcggggtttgaaccccgaaccttacatatattatgcattg 13401622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 43611489 - 43611449
Alignment:
Q  368 gtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  43611489 gtcggggtttgaaccccataccttacatatattatgtattg 43611449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 8269359 - 8269404
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||  ||||| ||| ||||||||||||    
T  8269359 tggtggtcggggtttgaaccccggaccttgcatatattatgtattg 8269404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 24571616 - 24571661
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  24571616 tggtggtcggagtttgaaccccagaccttgcatatattatgtattg 24571661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 27533313 - 27533268
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||| |||||| ||| ||||||| ||||    
T  27533313 tggtggtcggggtttgaaccccgaaccttgcatatattatgcattg 27533268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 34899617 - 34899662
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||| ||||||||||||||| || ||| ||||||||||||    
T  34899617 tggtggtcggagtttgaaccccaaactttgcatatattatgtattg 34899662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 8872930 - 8872898
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacat 395  Q
    |||||||||||||| ||||||||||||||||||    
T  8872930 tggtggtcggggttcgaaccccaaaccttacat 8872898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 24978314 - 24978270
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 407  Q
    ||||||||||| ||||||||| ||||||| ||| |||||||||||    
T  24978314 tggtggtcgggatttgaaccctaaaccttgcatatattatgtatt 24978270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 33382249 - 33382293
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 407  Q
    ||||||||||||||||||| ||| ||||||||| |||||| ||||    
T  33382249 tggtggtcggggtttgaacaccagaccttacatatattatttatt 33382293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 49196377 - 49196417
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    ||||||||||| |||||||||||||| |||||| |||||||    
T  49196377 tggtggtcgggatttgaaccccaaactttacatatattatg 49196417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 362 - 408
Target Start/End: Complemental strand, 38780051 - 38780005
Alignment:
Q  362 atggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||| |||||||||||||| |||||| |||||    
T  38780051 atggtggtcggggtttgaatcccaaaccttacatatattatttattg 38780005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 7994875 - 7994916
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgt 404  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  7994875 tggtggtcggggtttgaaccccagaccttacatatattatgt 7994916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 368 - 403
Target Start/End: Complemental strand, 45151442 - 45151407
Alignment:
Q  368 gtcggggtttgaaccccaaaccttacatctattatg 403  Q
    |||||||||||||||||||||||||||| |||||||    
T  45151442 gtcggggtttgaaccccaaaccttacatatattatg 45151407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 408
Target Start/End: Complemental strand, 5526796 - 5526750
Alignment:
Q  362 atggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||||||| |||| || ||||||| ||||    
T  5526796 atggtggtcggggtttgaaccccaaatcttatatatattatgcattg 5526750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 7388030 - 7388075
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||| ||| |||||||||| ||||||| ||||    
T  7388030 tggtggtcggggtttgaatcccgaaccttacatatattatgcattg 7388075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 26920705 - 26920750
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||||||  ||||||  |||||||||||    
T  26920705 tggtggtcggggtttgaaccccaaaatttacatacattatgtattg 26920750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 27833392 - 27833437
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  27833392 tggtggtcggggtttgaaccccggaccttacatatattatgcattg 27833437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 31414168 - 31414123
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||| ||| ||| ||||| ||||||||||||    
T  31414168 tggtggtcggggtttgaactccagaccctacatatattatgtattg 31414123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 46849098 - 46849143
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||| |||||| |||||| ||||||| ||||    
T  46849098 tggtggtcggggtttgaactccaaactttacatatattatgcattg 46849143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 5579763 - 5579723
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  5579763 tggtggtcggggtttgaaccccagaccttgcatatattatg 5579723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 25251575 - 25251535
Alignment:
Q  368 gtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||||| || ||||||| ||||    
T  25251575 gtcggggtttgaaccccaaaccttatatatattatgcattg 25251535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 44651571 - 44651539
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacat 395  Q
    ||||||| |||||||||||||||||||||||||    
T  44651571 tggtggttggggtttgaaccccaaaccttacat 44651539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 366 - 408
Target Start/End: Original strand, 2186421 - 2186463
Alignment:
Q  366 tggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  2186421 tggtcggggtttgaaccccagaccttacatatattatgtattg 2186463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 408
Target Start/End: Original strand, 55395323 - 55395360
Alignment:
Q  371 ggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  55395323 ggggtttgaaccccaaaccttacatatattatgtattg 55395360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 365 - 408
Target Start/End: Original strand, 1111834 - 1111877
Alignment:
Q  365 gtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||    
T  1111834 gtggtcggggtttgaaccccagaccttgcatatattatgtattg 1111877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 408
Target Start/End: Complemental strand, 35392074 - 35392028
Alignment:
Q  362 atggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||| |  ||||||||||||||||||||| ||||||||||||    
T  35392074 atggtggtctgactttgaaccccaaaccttacatatattatgtattg 35392028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 7464482 - 7464527
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  7464482 tggtggtcggggtttgaaccccggaccttacatatattatgcattg 7464527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 17755191 - 17755146
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||  |||||||||| |||||||||| ||||||||||||    
T  17755191 tggtggtcggaatttgaaccccgaaccttacatatattatgtattg 17755146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 19056511 - 19056466
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||  |||||||||| |||||||||| ||||||||||||    
T  19056511 tggtggtcggaatttgaaccccgaaccttacatatattatgtattg 19056466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 27185547 - 27185502
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||| ||||||||||||| ||||| ||| ||||||||||||    
T  27185547 tggtggtcgaggtttgaaccccagaccttgcatatattatgtattg 27185502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 48209202 - 48209247
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||  ||||||| || ||||||||||||    
T  48209202 tggtggtcggggtttgaaccctgaaccttatatatattatgtattg 48209247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 14030726 - 14030766
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    ||||||||||||||||||| ||||||||| ||| |||||||    
T  14030726 tggtggtcggggtttgaactccaaaccttgcatatattatg 14030766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 15170001 - 15169956
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  15170001 tggtggtcggggtttgaaccccgaaccttacatatattatgcattg 15169956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 15178773 - 15178728
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  15178773 tggtggtcggggtttgaaccccgaaccttacatatattatgcattg 15178728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 24623308 - 24623353
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  24623308 tggtggtcggggtttgaaccccgaaccttacatatattatgcattg 24623353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 9311923 - 9311965
Alignment:
Q  365 gtggtcggggtttgaaccccaaaccttacatctattatgtatt 407  Q
    |||||||||||||||||| |||| ||||||| |||||||||||    
T  9311923 gtggtcggggtttgaacctcaaatcttacatatattatgtatt 9311965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 4455587 - 4455627
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  4455587 tggtggtcggggtttgaaccccagaccttgcatatattatg 4455627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 22164260 - 22164305
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  22164260 tggtggtcggggtttgaaccccagaccttacatatattatgcattg 22164305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 408
Target Start/End: Complemental strand, 32268152 - 32268106
Alignment:
Q  362 atggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||| |||||||||||||||||| ||| ||||||| ||||    
T  32268152 atggtggtcggagtttgaaccccaaacctttcatatattatgcattg 32268106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 408
Target Start/End: Complemental strand, 50668407 - 50668365
Alignment:
Q  366 tggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||| |||||||||||||| |||||||||| ||||||||||||    
T  50668407 tggttggggtttgaaccccgaaccttacatatattatgtattg 50668365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 17729496 - 17729456
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  17729496 tggtggtcggggtttgaaccccagaccttgcatatattatg 17729456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 18903749 - 18903789
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    |||||||| |||||||||||||| ||||||||| |||||||    
T  18903749 tggtggtcagggtttgaaccccagaccttacatatattatg 18903789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 12800891 - 12800936
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||  ||||| ||| ||||||||||||    
T  12800891 tggtggtcggggtttgaaccccggaccttgcatatattatgtattg 12800936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 27571840 - 27571885
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| ||||    
T  27571840 tggtggtcgggatttgaaccccaaaccttgcatatattatgcattg 27571885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 37570745 - 37570789
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||| |||||||||| | ||||||||||    
T  37570745 tggtggtcggggtttgaacccc-aaccttacatatgttatgtattg 37570789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 44632176 - 44632221
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||| ||||||| || ||||||| ||||    
T  44632176 tggtggtcggggtttgaaccccgaaccttatatatattatgcattg 44632221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 3650590 - 3650550
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    |||||| ||||||||||||||| |||||||||| |||||||    
T  3650590 tggtggccggggtttgaaccccgaaccttacatatattatg 3650550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 7997010 - 7996970
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  7997010 tggtggtcggggtttgaaccccagaccttgcatatattatg 7996970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 13864414 - 13864369
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    ||||||||||||||||||||||  ||||| ||| ||||||||||||    
T  13864414 tggtggtcggggtttgaaccccggaccttgcatatattatgtattg 13864369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 19000019 - 18999974
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||| | |||||||||||||||||||||| |||||| |||||    
T  19000019 tggtggtcagagtttgaaccccaaaccttacatatattatatattg 18999974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 29695085 - 29695040
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||| | |||||||||| ||||||| ||||    
T  29695085 tggtggtcggggtttgaaccacgaaccttacatatattatgcattg 29695040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 37884733 - 37884688
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtattg 408  Q
    |||||||||||||||||||||   ||||||||||| ||||||||||    
T  37884733 tggtggtcggggtttgaaccctggaccttacatcttttatgtattg 37884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 41266456 - 41266415
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgt 404  Q
    ||||||||||||| |||||||| |||||||||| ||||||||    
T  41266456 tggtggtcggggtgtgaaccccgaaccttacatatattatgt 41266415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 1809114 - 1809074
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatg 403  Q
    |||||||| |||||||||||||||| ||||||| |||||||    
T  1809114 tggtggtcagggtttgaaccccaaatcttacatatattatg 1809074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 19647498 - 19647538
Alignment:
Q  362 atggtggtcggggtttgaaccccaaaccttacatctattat 402  Q
    |||||||||||| ||||||||||| ||||||||| ||||||    
T  19647498 atggtggtcgggatttgaaccccagaccttacatatattat 19647538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 26675937 - 26675981
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 407  Q
    ||||||||| ||| |||||| |||||||||||| |||||||||||    
T  26675937 tggtggtcgaggtgtgaaccacaaaccttacatatattatgtatt 26675981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 26947545 - 26947589
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 407  Q
    ||||||||| ||| |||||| |||||||||||| |||||||||||    
T  26947545 tggtggtcgaggtgtgaaccacaaaccttacatatattatgtatt 26947589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 39454 - 39422
Alignment:
Q  363 tggtggtcggggtttgaaccccaaaccttacat 395  Q
    ||||||||||||||||||||||| |||||||||    
T  39454 tggtggtcggggtttgaaccccagaccttacat 39422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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