View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4384-Insertion-9 (Length: 341)
Name: NF4384-Insertion-9
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4384-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 42362595 - 42362262
Alignment:
| Q |
8 |
atatcctcccaccaaatgaagaacaatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcctggagtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42362595 |
atatcctcccaccaaatgaagaacaatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcctggagtt |
42362496 |
T |
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| Q |
108 |
tgatttccaaaagctgcatatccgaagcatgcacaacataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgtttt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42362495 |
tgatttccaaaagctgcatatccgaagcatgcacaacataggtagaagaatgttgtaatcaagattgcaatcatggaggcctttttcatggtcttgtttt |
42362396 |
T |
|
| Q |
208 |
ctgctggaggagactctagagtgtcctttgttcaatatnnnnnnnnnnnnngagttcaatgccttaagttaagcctttaactctgtatagtatatgaacc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42362395 |
ctgctggaggagactctagagtgtcctttgttcaatataaaaaaagaaaaagagttcaatgctttaagttaagcctttaactctgtatagtatatgaacc |
42362296 |
T |
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| Q |
308 |
actgatacagacacaacacataacactgtcacgt |
341 |
Q |
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| T |
42362295 |
actgatacagacacaacacataacactgacacgt |
42362262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 24379380 - 24379146
Alignment:
| Q |
8 |
atatcctcccaccaaatgaagaacaatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcctggagtt |
107 |
Q |
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| T |
24379380 |
atatcctccaaccaaatgaatgataatgcaaacattggcaaggtcaataagccagtaaggctcataaaacccaaaccctgtcaagagatttcctggtgta |
24379281 |
T |
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| Q |
108 |
tgatttccaaaagctgcatatccgaagcatgcacaacataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgtttt |
207 |
Q |
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||||||||||||||||||||| |||| | ||||||||| |||| ||||||||||||| ||||||| |||| |||||||||||||||||| | || | |
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| T |
24379280 |
gcatttccaaaagctgcatatccaaagcctccacaacatatgtagaagaatgttgtaatggagattgccatcatggaggcctttttcatggtttgattct |
24379181 |
T |
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| Q |
208 |
ctgctggaggagactctagagtgtcctttgttcaa |
242 |
Q |
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||| |||||||||||||||||||||||||| |||| |
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| T |
24379180 |
ctggtggaggagactctagagtgtcctttgctcaa |
24379146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 24414433 - 24414211
Alignment:
| Q |
12 |
cctcccaccaaatgaagaacaatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcctggagtttgat |
111 |
Q |
| |
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||||| |||||||||| | ||| ||| |||| |||| |||||| |||||||| || ||| |||||||||| ||||||||||| |||||||| || || |
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| T |
24414433 |
cctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttcctggtgtagcat |
24414334 |
T |
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| Q |
112 |
ttccaaaagctgcatatccgaagcatgcacaacataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgttttctgc |
211 |
Q |
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|||||||||||||||||| |||||| |||| ||||||||| ||||||||||||| |||||||||| || ||| ||||||||||| || | || |||| |
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| T |
24414333 |
ctccaaaagctgcatatccaaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgtttgattctctgg |
24414234 |
T |
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| Q |
212 |
tggaggagactctagagtgtcct |
234 |
Q |
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| T |
24414233 |
tggaggagactctagtgtgtcct |
24414211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 24419528 - 24419750
Alignment:
| Q |
12 |
cctcccaccaaatgaagaacaatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcctggagtttgat |
111 |
Q |
| |
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||||| |||||||||| | ||| ||| |||| |||| |||||| |||||||| || ||| |||||||||| ||||||||||| |||||||| || || |
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| T |
24419528 |
cctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatttcctggtgtagcat |
24419627 |
T |
|
| Q |
112 |
ttccaaaagctgcatatccgaagcatgcacaacataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgttttctgc |
211 |
Q |
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|||||||||||||||||| |||||| |||| ||||||||| ||||||||||||| |||||||||| || ||| ||||||||||| || | || |||| |
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| T |
24419628 |
ctccaaaagctgcatatccaaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgtttgattctctgg |
24419727 |
T |
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| Q |
212 |
tggaggagactctagagtgtcct |
234 |
Q |
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| T |
24419728 |
tggaggagactctagtgtgtcct |
24419750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 24402180 - 24401950
Alignment:
| Q |
12 |
cctcccaccaaatgaagaacaatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcctggagtttgat |
111 |
Q |
| |
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||||| |||||||||| | ||||||| |||| |||| ||||| ||||| || || |||||||| ||||| ||||||||||| |||||||| || || |
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| T |
24402180 |
cctccaaccaaatgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttcctggtgtagcat |
24402081 |
T |
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| Q |
112 |
ttccaaaagctgcatatccgaagcatgcacaacataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgttttctgc |
211 |
Q |
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|||||||| ||||||||| |||| | | ||||||| |||| ||||||||||||| | |||| | || ||||||||||||||||| | || || || |
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| T |
24402080 |
ctccaaaagatgcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatggattgattctccgc |
24401981 |
T |
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| Q |
212 |
tggaggagactctagagtgtcctttgttcaa |
242 |
Q |
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|||||||||||| ||||||||||||| |||| |
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| T |
24401980 |
tggaggagactcgagagtgtcctttgctcaa |
24401950 |
T |
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