View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4384_high_2 (Length: 354)
Name: NF4384_high_2
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4384_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 18130946 - 18130618
Alignment:
| Q |
14 |
agcaactgttattgtggtctttaagaaataaacaaccaaaagtcttaaactaatttatattgattttttagcttgatagtgatgtaccagcagtaaatta |
113 |
Q |
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| T |
18130946 |
agcaactgttattgtggtctttaagaaataaacaaccaaaagtcttaaactaatttatattgattgtttagcttgatagtgatgtaccagcagtaaatta |
18130847 |
T |
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| Q |
114 |
tcataacctccaacacctaccttcccaactaccattttccacctgtatcaacttatcaattaaaaatgataatggtagttgttaatgtaattatctgttt |
213 |
Q |
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| T |
18130846 |
tcataacctccaacacctaccttcccaactaccacttcccatctgcatcaacttatcaattaaaaatgataatggtagttgttaatgtaattat-tgttt |
18130748 |
T |
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| Q |
214 |
gataaacttgcaaaatcagaatcatctgaattcagagaataataataggttggttacttagactataaggtccataactgaaaactaatatttttattaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18130747 |
gataaacttgcaaaatcagaatcatctgaattcagagaataataataggttggttacttagactataaggtccataactgaaaactaatatttttattaa |
18130648 |
T |
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| Q |
314 |
ataaatcaacaaagaacaccttagagtatt |
343 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
18130647 |
ataaatcaacaaagaacaccttagactatt |
18130618 |
T |
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