View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4384_high_3 (Length: 321)
Name: NF4384_high_3
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4384_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 39680944 - 39680640
Alignment:
| Q |
1 |
cagtgctgctaaaaataacacgagaagaataaacgaacaactttcatacactttagttgactacacgattctaatttcggacagatctagaacataacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39680944 |
cagtgctgctaaaaataacacgagaagaataaacgaacaactttcatacactttagttgactactcgattctaatttcggacagatctagaacataacaa |
39680845 |
T |
|
| Q |
101 |
ttcattgcttgtgatatttagcatccctataacactcttgataaaactttacaatacattccagcaagatactcaataattaaagaagaaaacactc--c |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
39680844 |
ttcattgcttgtgatatttagcatccctataacactcttgataaaactttacaatacattccaccaagatactcaataattaaagaagaaaacactccac |
39680745 |
T |
|
| Q |
199 |
agtgtggtattgtgtctcctatatttattatcagtaacaattcaaatatggtaagaattaagacatgtctgaaaatatggtaaatagatatagctaaagt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39680744 |
agtgtggtattgtgtctcctatatttattatcagtaacaattcaaatatggtaagaattaagacatatctgaaaatatggtaaatagatatagctaaagt |
39680645 |
T |
|
| Q |
299 |
tagta |
303 |
Q |
| |
|
||||| |
|
|
| T |
39680644 |
tagta |
39680640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University