View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4384_low_1 (Length: 460)
Name: NF4384_low_1
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4384_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 55377223 - 55377671
Alignment:
| Q |
18 |
agtttgtggttggaggcaatgcaaggaagtgaagggtgaaactgaaattaagaaattgataaccttaattacctgagaggcatagggccaaggtggtgag |
117 |
Q |
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| T |
55377223 |
agtttgtggttggaggcaatgcaaggaagtgaagggtgaaactgaaattaagaaattgataaccttaattacctgagaggcatagggccaaggtggtgag |
55377322 |
T |
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| Q |
118 |
ttttcagattcagcaggagcaacatcaaatttgaaatcaaggagtgccgttgaagaagacaaaatacagtgtcttgttgtagttgttttgggtgctgcat |
217 |
Q |
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| T |
55377323 |
ttttcagattcagcaggagcaacatcaaatttgaaatcaaggagtgccgttgaagaagacaaaatacagtgtcttgttgtagttgttttgggtgctgcat |
55377422 |
T |
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| Q |
218 |
caaaaagaaaagagtgaggtgagaaatgagnnnnnnnnnnnnnnnnnnngagaattgtttatgcatacactgaagaagaaaga---------gatgatga |
308 |
Q |
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| T |
55377423 |
caaaaagaaaagagtgaggtgagaaatgagaatataatataatataatagagaattgtttatgcatacactgaagaagaaagagatgatgatgatgatga |
55377522 |
T |
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| Q |
309 |
tgatgatggcggtgggtagggatcctgatgaaagtgtctgggttgcagatgaattgtggcaataaacacgacgacgatgatgaccacattatcctttctc |
408 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55377523 |
tgatgatgccggtgggtagggattctgatgaaagtgtctgggttgcagatgaattgtggcaataaacacgacgacgatgatgaccacattatcctttctc |
55377622 |
T |
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| Q |
409 |
caaaaaataagagtt----accaactaactactaactaacttcatttca |
453 |
Q |
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| T |
55377623 |
caaaaaataagagttactaactaactaactactaactaacttcatttca |
55377671 |
T |
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