View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4384_low_8 (Length: 223)
Name: NF4384_low_8
Description: NF4384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4384_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40804181 - 40804403
Alignment:
| Q |
1 |
tcatcaagggattaaaacaaaagagaaacataattggtaatatatttgaatctcaacacagtcaaagaacatatttaaactcagtcattaatgcttaatc |
100 |
Q |
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| T |
40804181 |
tcatcaagggactaaaacaaaagagaaacataattggtaatatatttgaatctcaacacagtcaaagaacatatttaaactcagtcattaatgcttaatc |
40804280 |
T |
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| Q |
101 |
aattattgactcaactcaagtttttaagaggaaagataagtgactggtcataaatcattggtgtttcaagcctaataaagggaacaatacatatcaattt |
200 |
Q |
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| T |
40804281 |
aattattgactcaactcaagtttttaagaggaaagataagcgactggtcataaatcattggtgtttcaagcctaataaagggaacaatacatatcaattt |
40804380 |
T |
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| Q |
201 |
cttgacaatgacgaccctttaat |
223 |
Q |
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| T |
40804381 |
cttgacaatgacgaccctttaat |
40804403 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 5115847 - 5115901
Alignment:
| Q |
157 |
attggtgtttcaagcctaataaagggaacaatacatatcaatttcttgacaatga |
211 |
Q |
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| T |
5115847 |
attggtgtttcaagcccaataacaggaacaagacatatcattttcttgacaatga |
5115901 |
T |
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