View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4385-Insertion-1 (Length: 1105)
Name: NF4385-Insertion-1
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4385-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 893; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 893; E-Value: 0
Query Start/End: Original strand, 8 - 1104
Target Start/End: Original strand, 7425547 - 7426658
Alignment:
| Q |
8 |
acatgttccataaaccaatcaaacttcttacccaaagtcttcattctcttcacataaccttgcaagtctaagaaatgaatccaaggaataaaatccccaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7425547 |
acatgttccataaaccaatcaaacttcttacccaaagtcttcattctcttcacataaccttgcaagtctaagaaatgaatccaaggaataaaatccccaa |
7425646 |
T |
|
| Q |
108 |
tattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactcttctccaaatactttttccc |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7425647 |
cattgaggaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactcttctccaaatactttttgcc |
7425746 |
T |
|
| Q |
208 |
caaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaaatagttcgtgcaagaaagca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7425747 |
caaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgaattaaatagttcgtgcaagaaagca |
7425846 |
T |
|
| Q |
308 |
tgtaactcttgttttctcatgtactcataagactcgaggcgttttacactaaacagttctagtagacacattttacgagcttgttgccaatatgggccgt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7425847 |
tgtaactcttgttttctcatgtactcataagactcaaggcgttttacactaaacagttctagcagacacattttacgagcttgttgccaatatgggccat |
7425946 |
T |
|
| Q |
408 |
attgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaaggacagcgtcgtttgttttgaggaaagc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7425947 |
attgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaaggacagcgtcgtttgttttgaggaaaac |
7426046 |
T |
|
| Q |
508 |
tttggctatttctgggctcgatcccacaatgacaggtttagagccgaaccataaatgcatgatgggtccatattttttagtgagcccatggagagattga |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
7426047 |
tttggctatttctgggctcgatcccacaatgacaggtttagagccgaaccataaatgcatgatgggtccatattttttagtgagcccgtggagggattga |
7426146 |
T |
|
| Q |
608 |
tgcgggagtgatccaataagattgagatttcctattatgggccatgattttgggccaggtggtagattgtatttacggcggtggagatgaagacggcggc |
707 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7426147 |
tgtggaagtgatccaataagattgagatttcctattatgggccatgattttgggccaggtggtagattgtatttacggcggtggagacgaagacggcggc |
7426246 |
T |
|
| Q |
708 |
gggtaaagagaagaaggatgataaatgtagtnnnnnnngtaacccaattaggaagtggcaataattctactaccatttctagtgagttttgtgactttgt |
807 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7426247 |
gggtaaagagaagaaggatgataaatgttgtaaaaaaagtaacccaattaggaagtggcaataattctactaccatttctagtgagttttgtgactttgt |
7426346 |
T |
|
| Q |
808 |
-----tgtgagattagagggtgactgtgatgaaatt--agagtcatttatttataatcatagtagagaaagctgtagatgaggattacatggccccgtga |
900 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7426347 |
tttggtgtgagattagagagtgactgtgatgaaattagagagtcatttatttataatcatagtagagaaagctgtagatgaggattacatggccccgtga |
7426446 |
T |
|
| Q |
901 |
gtagtgaggcaaaatatctcgaatagatacacctctttataatcaaatatatacttcctgttcaagcttgtttgatta-taaactttaacgtattcattt |
999 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
7426447 |
gtagtgaggcaaaatatctccaatagatacacctctttataatcaa--atatacttcattttcaagcttgtttaattattaaactttaacgtattcattt |
7426544 |
T |
|
| Q |
1000 |
attaaaacaaatgggt--catc-atgagcaataaaatatacattaatttcttaa-taggttt-acta--ctgttc-agc-tttattttataacaacgtga |
1090 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||| |||||||||| ||||| ||| |
|
|
| T |
7426545 |
attaaaacaaatgggttcaatcaatgagcaataaaatatacattaatttcttaattaggtttaactaacctgttcaagcttttattttattacaacatga |
7426644 |
T |
|
| Q |
1091 |
aagttatcttgtcg |
1104 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7426645 |
aagttatcttgtcg |
7426658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 779
Target Start/End: Original strand, 7431536 - 7432304
Alignment:
| Q |
8 |
acatgttccataaaccaatcaaacttcttacccaaagtcttcattctcttcacataaccttgcaagtctaagaaatgaatccaaggaataaaatccccaa |
107 |
Q |
| |
|
|||||||||||||||| || ||| ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7431536 |
acatgttccataaacctattaaatctcttaccacaagccttcattctcttcacataaccttgcaagtctaagaattgaatccaaggaataaaatccccaa |
7431635 |
T |
|
| Q |
108 |
tattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactcttctccaaatactttttccc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || || ||||| |
|
|
| T |
7431636 |
tattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcaggggaaataataacattttcactcttctccaagtatttcttccc |
7431735 |
T |
|
| Q |
208 |
caaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaaatagttcgtgcaagaaagca |
307 |
Q |
| |
|
||| |||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| || || |||| |||| ||| | |
|
|
| T |
7431736 |
caacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttgaattgaagagtttatgcagaaaaata |
7431835 |
T |
|
| Q |
308 |
tgtaactcttgttttctcatgtactcataagactcgaggcgttttacactaaacagttctagtagacacattttacgagcttgttgccaatatgggccgt |
407 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||| | |||||||||||||| ||| | || |||||||||| |||||||| ||||||| |||| |
|
|
| T |
7431836 |
tgtaattcttcttttctcatgtactcataagactcgagactttttacactaaacaattccctttgaaacattttacgggcttgttgaaaatatggaccgt |
7431935 |
T |
|
| Q |
408 |
attgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaaggacagcgtcgtttgttttgaggaaagc |
507 |
Q |
| |
|
|| || |||||| ||||| |||||||||||||| || |||||||| || |||||||| || || |||||||| |||||||||||| |||||||| |
|
|
| T |
7431936 |
atgggttccaagtgatgttagagtagttataagttgtgtattttccgcaggcaaatttgggtcgtccgacaaggacaatgtcgtttgttttaaggaaagc |
7432035 |
T |
|
| Q |
508 |
tttggctatttctgggctcgatcccacaatgacaggtttagagccgaaccataaatgcatgatgggtccatattttttagtgagcccatggagagattga |
607 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |||| || |||||||||| | |||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
7432036 |
tttggctatatctgggctcgagcccacaatgacgagtttggatccgaaccatagacgcatgatggggccatattttttagtgagcccatggatggattga |
7432135 |
T |
|
| Q |
608 |
tgcgggagtgatccaataagattgagatttcctattatgggccatgattttgggccaggtggtagattgtatttacggcggtggagatgaagacggcggc |
707 |
Q |
| |
|
|| ||||| ||||| ||||| || | |||||||||||| ||||||| |||||| || ||||||||||||||||| ||||| |||||| ||||| ||| |
|
|
| T |
7432136 |
tgtgggagggatccgataaggttcatatttcctattataggccatggttttggtcctggtggtagattgtatttgcggcgatggagacgaaga---cggt |
7432232 |
T |
|
| Q |
708 |
gggtaaagagaagaaggatgataaatgtagtnnnnnnngtaacccaattaggaagtggcaataattctacta |
779 |
Q |
| |
|
|| | || || |||||||||| |||||| || |||||||||||||||||| ||||||||||||| |
|
|
| T |
7432233 |
ggatgaataggagaaggatgacaaatgttgtacaaaatgtaacccaattaggaagtacaaataattctacta |
7432304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 8 - 681
Target Start/End: Original strand, 7416561 - 7417234
Alignment:
| Q |
8 |
acatgttccataaaccaatcaaacttcttacccaaagtcttcattctcttcacataaccttgcaagtctaagaaatgaatccaaggaataaaatccccaa |
107 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7416561 |
acatgttccataaacctatcaaactttttactcaaagtcttcatcctcttcacataaccttgcaagtctaagaaatgaatccaaggaataaaatccccaa |
7416660 |
T |
|
| Q |
108 |
tattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactcttctccaaatactttttccc |
207 |
Q |
| |
|
|||||| | |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||| ||| |||| ||||| ||||||||||| |
|
|
| T |
7416661 |
tattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcattatcagtcttttccaagtactttttccc |
7416760 |
T |
|
| Q |
208 |
caaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaaatagttcgtgcaagaaagca |
307 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| || || |||| ||||| ||| || |
|
|
| T |
7416761 |
tagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttgaattgaaaagtttatgcaaaaaatca |
7416860 |
T |
|
| Q |
308 |
tgtaactcttgttttctcatgtactcataagactcgaggcgttttacactaaacagttctagtagacacattttacgagcttgttgccaatatgggccgt |
407 |
Q |
| |
|
|| | |||||||||||| |||||||| |||||||||||||||||| ||||||||| || | |||||||||| |||||||||| |||||||||| || | |
|
|
| T |
7416861 |
tgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattctacgagcttgacgccaatatggaccat |
7416960 |
T |
|
| Q |
408 |
attgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaaggacagcgtcgtttgttttgaggaaagc |
507 |
Q |
| |
|
|||| |||||||| |||| || |||||||| || || ||||||||||| || ||||||||||| || ||||| ||| || | ||||||||||| | |
|
|
| T |
7416961 |
attgagaccaagttatgtctgaatagttatatgttgtgtattttccagccgacaatttgggccggccggcaagagtagcatcatgggttttgaggaatga |
7417060 |
T |
|
| Q |
508 |
tttggctatttctgggctcgatcccacaatgacaggtttagagccgaaccataaatgcatgatgggtccatattttttagtgagcccatggagagattga |
607 |
Q |
| |
|
|||||||| |||| | | | ||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
7417061 |
tttggctagttctacggtggcgcccacaatgacgggtttcgagccgaaatatagatgcatgatgggtccatatttttgagtgaggccatggagggattga |
7417160 |
T |
|
| Q |
608 |
tgcgggagtgatccaataagattgagatttcctattatgggccatgattttgggccaggtggtagattgtattt |
681 |
Q |
| |
|
|| ||||| ||||| ||||| ||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
7417161 |
tgtgggagggatccgataaggttgagatttccaattataggccatggttttgggcctggtggtagattgtattt |
7417234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 7430039 - 7429973
Alignment:
| Q |
212 |
accatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgtttt |
278 |
Q |
| |
|
||||||||||| |||| ||||| ||| |||||||||||||||||||| ||| |||| ||||| |||| |
|
|
| T |
7430039 |
accatgcgactaataatattgaaactaaaagttgaaagatggtcctttaacgaaatagttttatttt |
7429973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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