View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4385-Insertion-2 (Length: 935)

Name: NF4385-Insertion-2
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4385-Insertion-2
NF4385-Insertion-2
[»] chr1 (14 HSPs)
chr1 (8-935)||(1878954-1879882)
chr1 (745-793)||(15360846-15360894)
chr1 (779-845)||(28689447-28689516)
chr1 (745-854)||(46499860-46499972)
chr1 (740-793)||(49517017-49517070)
chr1 (740-787)||(14737781-14737828)
chr1 (746-793)||(25006104-25006151)
chr1 (746-793)||(27738250-27738297)
chr1 (746-793)||(44032069-44032116)
chr1 (296-350)||(3259622-3259676)
chr1 (739-793)||(44936660-44936714)
chr1 (740-793)||(4200176-4200229)
chr1 (666-703)||(16322720-16322757)
chr1 (740-773)||(42169632-42169665)
[»] chr3 (15 HSPs)
chr3 (745-801)||(49586978-49587034)
chr3 (745-793)||(1395623-1395671)
chr3 (745-793)||(42038941-42038989)
chr3 (740-791)||(10101548-10101599)
chr3 (740-791)||(10212473-10212524)
chr3 (750-792)||(23793545-23793587)
chr3 (745-795)||(34954035-34954085)
chr3 (745-795)||(42809253-42809303)
chr3 (740-790)||(54775075-54775125)
chr3 (745-790)||(15304420-15304465)
chr3 (745-790)||(20192679-20192724)
chr3 (743-776)||(20267105-20267138)
chr3 (669-702)||(21574373-21574406)
chr3 (740-793)||(23785202-23785255)
chr3 (746-795)||(42808932-42808981)
[»] scaffold0024 (1 HSPs)
scaffold0024 (740-790)||(27523-27573)
[»] chr4 (14 HSPs)
chr4 (745-795)||(41701509-41701559)
chr4 (745-793)||(29373957-29374005)
chr4 (746-793)||(53626729-53626776)
chr4 (740-793)||(30024647-30024700)
chr4 (745-793)||(4071834-4071882)
chr4 (745-793)||(54325107-54325155)
chr4 (746-793)||(54327519-54327566)
chr4 (745-795)||(6360774-6360824)
chr4 (740-854)||(19422365-19422482)
chr4 (745-795)||(22684584-22684634)
chr4 (745-795)||(47800582-47800632)
chr4 (669-702)||(33640989-33641022)
chr4 (740-793)||(44119232-44119285)
chr4 (740-793)||(49219086-49219139)
[»] chr5 (14 HSPs)
chr5 (745-793)||(14295458-14295506)
chr5 (750-793)||(583843-583886)
chr5 (745-790)||(28586839-28586884)
chr5 (745-823)||(29116968-29117048)
chr5 (740-787)||(27105998-27106046)
chr5 (745-793)||(35135732-35135780)
chr5 (745-787)||(7096203-7096245)
chr5 (745-791)||(37063146-37063192)
chr5 (740-792)||(912719-912772)
chr5 (745-786)||(10303753-10303794)
chr5 (745-790)||(20982208-20982253)
chr5 (740-793)||(37526269-37526322)
chr5 (740-793)||(37588430-37588483)
chr5 (740-793)||(37690707-37690760)
[»] chr8 (8 HSPs)
chr8 (745-796)||(25867038-25867089)
chr8 (746-795)||(29262942-29262991)
chr8 (750-845)||(20672729-20672825)
chr8 (740-791)||(29699201-29699252)
chr8 (745-796)||(44348439-44348490)
chr8 (745-778)||(926439-926472)
chr8 (746-791)||(2100758-2100803)
chr8 (745-790)||(13561385-13561430)
[»] chr7 (16 HSPs)
chr7 (740-791)||(39591539-39591590)
chr7 (745-817)||(42656467-42656541)
chr7 (745-791)||(35536059-35536105)
chr7 (745-792)||(1417216-1417263)
chr7 (745-791)||(2999143-2999190)
chr7 (745-791)||(1418383-1418429)
chr7 (749-791)||(5006581-5006623)
chr7 (745-791)||(5373177-5373223)
chr7 (745-795)||(27121654-27121704)
chr7 (745-791)||(30456522-30456568)
chr7 (745-790)||(3802212-3802257)
chr7 (748-793)||(23918912-23918957)
chr7 (745-794)||(43318597-43318646)
chr7 (750-787)||(44239056-44239093)
chr7 (747-792)||(46825052-46825097)
chr7 (669-702)||(47616778-47616811)
[»] chr2 (11 HSPs)
chr2 (745-791)||(33192145-33192191)
chr2 (745-791)||(37053546-37053592)
chr2 (746-787)||(15171203-15171244)
chr2 (745-793)||(9478251-9478299)
chr2 (745-793)||(17952771-17952819)
chr2 (740-795)||(3458604-3458659)
chr2 (667-706)||(12785751-12785790)
chr2 (394-440)||(10231796-10231842)
chr2 (745-787)||(32098384-32098426)
chr2 (740-793)||(10143119-10143172)
chr2 (740-793)||(28803576-28803629)
[»] chr6 (8 HSPs)
chr6 (746-795)||(27693507-27693556)
chr6 (745-793)||(29274299-29274347)
chr6 (745-776)||(29269848-29269879)
chr6 (740-790)||(5328921-5328971)
chr6 (751-793)||(7713983-7714025)
chr6 (740-790)||(24836272-24836322)
chr6 (746-795)||(27595635-27595684)
chr6 (746-795)||(29940749-29940798)
[»] scaffold0508 (1 HSPs)
scaffold0508 (740-791)||(9847-9898)


Alignment Details
Target: chr1 (Bit Score: 881; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 881; E-Value: 0
Query Start/End: Original strand, 8 - 935
Target Start/End: Complemental strand, 1879882 - 1878954
Alignment:
Q  8 agacctcctgttggctctcagcctaatactatggaaaccaagtctagtggaagaatggaacttccagaggtaattgatgcatccatttgtcactacattc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1879882 agacctcctgttggctctcagcctaatactatggaaaccaagtctagtggaagaatggaacttccagaggtaatagatgcatccatttgtcactacattc 1879783  T
Q  108 tttgtttttgcagatacaggaaccttactgcttaaataatttctctgcaggacctttttagtacacgatacttatccggccctgcagcacatgcaggctg 207  Q
    |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879782 tttgttttcgcagatacaggaaccttactacctaaataatttctctgcaggacctttttagtacacgatacttatccggccctgcagcacatgcaggctg 1879683  T
Q  208 gcagaatcttcaacatcatgtcatgggatatggcatgcagtattaccctaatgcaatggtacactctttgcatctcattatcaattttgatttaattcat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879682 gcagaatcttcaacatcatgtcatgggatatggcatgcagtattaccctaatgcaatggtacactctttgcatctcattatcaattttgatttaattcat 1879583  T
Q  308 acacaccgttagtgtaaatattttttacagtttcaatcaatcacattcgtcagattataaagaacatttgacttcatatacattttcagtgtaaaacttt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1879582 acacaccgttagtgtaaatattttttacagtttcaatcaatcatattcgtcagattataaagaacatttgacttcatatacattttcagtgtaaaaattt 1879483  T
Q  408 ttacacttacgatgtatcaaaataaaactctatcaagtttagttttagtttttcttggttttgatatcaatgctgattgaatgatatgatgtttcatttg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879482 ttacacttacgatgtatcaaaataaaactctatcaagtttagttttagtttttcttggttttgatatcaatgctgattgaatgatatgatgtttcatttg 1879383  T
Q  508 cagcctcctccagcacttccaactgcaccaaaatacatgaacccgtttgacataactgaagggagaagtctagcgcatgcaacatcggtatgtacaacat 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879382 cagcctcctccagcacttccaactgcaccaaaatacatgaacccgtttgacataactgaagggagaagtctagcgcatgcaacatcggtatgtacaacat 1879283  T
Q  608 taaactaatatattatgctgtagtatgccttgatatggttctattgaaaacattgtaatcttgtttggataaactgcttaattaagtgcttatagcttat 707  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879282 taaactaatatattatgctgtagtatgccttgctatgattctattgaaaacattgtaatcttgtttggataaactgcttaattaagtgcttatagcttat 1879183  T
Q  708 agcataaacacttatcacatagtgcttacctgaagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaagtat 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1879182 agcataaacacttatcacatagtgcttacctgaagtcatttctataacagaagataaaataaagtcaaaatgttttcatataagctgtcttggaaagtat 1879083  T
Q  808 gaaaataagctcaaaaagcctatggacatgtcataagccatttccatttactctctgaaacagtctttcaagtgcatgtgttttacttagcttgaagtag 907  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879082 gaaaataagctgaaaaagcctatggacatgtcataagccatttccatttactctctgaaacagtctttcaagtgcatgtgttttacttagcttgaagtag 1878983  T
Q  908 aagttttcttcaaaga-ctctctctgcag 935  Q
    |||||||||||||||| ||||||||||||    
T  1878982 aagttttcttcaaagacctctctctgcag 1878954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 15360846 - 15360894
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||||    
T  15360846 atttctataacaaaagataaaataaagtcaaactgttttcatataagct 15360894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 779 - 845
Target Start/End: Complemental strand, 28689516 - 28689447
Alignment:
Q  779 gttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa-agcctatggacatgtcataagc 845  Q
    ||||||||||||||| ||||||||||  |||||||||||||| |||| | | ||||||||||||||||||    
T  28689516 gttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagc 28689447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 854
Target Start/End: Complemental strand, 46499972 - 46499860
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa-agcctatggacatgtcat 841  Q
    |||||||||| | |||||||||||||||||||  ||||| || |||||| || |||| ||  |||||||||||| | |||| ||  || |||||||||||    
T  46499972 atttctataagaaaagataaaataaagtcaaattgtttttatttaagctttcatggagagcttatgaaaataaggttaaaacagtttagggacatgtcat 46499873  T
Q  842 aagccatttccat 854  Q
    ||||| |||||||    
T  46499872 aagccgtttccat 46499860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 49517017 - 49517070
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| |||||||||||| |||||||||||||||||||  |||||||| ||||||    
T  49517017 aagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagct 49517070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 787
Target Start/End: Complemental strand, 14737828 - 14737781
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcata 787  Q
    |||| |||||||||||| |||||||||||||||||||  |||||||||    
T  14737828 aagttatttctataacaaaagataaaataaagtcaaattgttttcata 14737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 793
Target Start/End: Complemental strand, 25006151 - 25006104
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    ||||||||||||| | |||||||||||||||  |||||||||||||||    
T  25006151 tttctataacagacggtaaaataaagtcaaattgttttcatataagct 25006104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 793
Target Start/End: Complemental strand, 27738297 - 27738250
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||| |||| |||||||||||||||||||  |||||||||||||||    
T  27738297 tttctacaacaaaagataaaataaagtcaaattgttttcatataagct 27738250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 793
Target Start/End: Complemental strand, 44032116 - 44032069
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    ||||||||||| ||| |||||||||||||||  |||||||||||||||    
T  44032116 tttctataacaaaagctaaaataaagtcaaattgttttcatataagct 44032069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 3259622 - 3259676
Alignment:
Q  296 gatttaattcatacacaccgttagtgtaaatattttttacagtttcaatcaatca 350  Q
    ||||||||||||| ||||| |||||||||| |  ||||||| |||||||||||||    
T  3259622 gatttaattcatatacaccattagtgtaaagagcttttacactttcaatcaatca 3259676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 739 - 793
Target Start/End: Complemental strand, 44936714 - 44936660
Alignment:
Q  739 gaagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    ||||| |||||||||||| ||||||| |||||||||||   ||||||||||||||    
T  44936714 gaagttatttctataacaaaagataagataaagtcaaactattttcatataagct 44936660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 4200176 - 4200229
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| |||| ||||||| ||||||||||||||||||   |||||||||||||||    
T  4200176 aagttatttttataacaaaagataaaataaagtcaagttgttttcatataagct 4200229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 703
Target Start/End: Original strand, 16322720 - 16322757
Alignment:
Q  666 tcttgtttggataaactgcttaattaagtgcttatagc 703  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  16322720 tcttgtttggataaacaacttaattaagtgcttatagc 16322757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 773
Target Start/End: Complemental strand, 42169665 - 42169632
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtc 773  Q
    |||| |||||||||||||||||||||||||||||    
T  42169665 aagttatttctataacagaagataaaataaagtc 42169632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 745 - 801
Target Start/End: Complemental strand, 49587034 - 49586978
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttgga 801  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||| |||||||    
T  49587034 atttctataacaaaagataaaataaagtcaaactgttttcatataagctatcttgga 49586978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 1395623 - 1395671
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||||||||| |||||||||||||||||||   ||||||||||||||    
T  1395623 atttctataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 42038941 - 42038989
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||||||||| |||||  |||||||||||| ||||||||||||||||    
T  42038941 atttctataacaaaagatctaataaagtcaaaccgttttcatataagct 42038989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 791
Target Start/End: Complemental strand, 10101599 - 10101548
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||| |||||||||||| ||||||||||||||| |||  |||||||||||||    
T  10101599 aagttatttctataacaaaagataaaataaagttaaattgttttcatataag 10101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 791
Target Start/End: Complemental strand, 10212524 - 10212473
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||| |||||||||||| ||||||||||||||| |||  |||||||||||||    
T  10212524 aagttatttctataacaaaagataaaataaagttaaattgttttcatataag 10212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 750 - 792
Target Start/End: Original strand, 23793545 - 23793587
Alignment:
Q  750 tataacagaagataaaataaagtcaaaacgttttcatataagc 792  Q
    ||||||| |||||||||||||||||||| | ||||||||||||    
T  23793545 tataacaaaagataaaataaagtcaaaatgatttcatataagc 23793587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Original strand, 34954035 - 34954085
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    |||||||||||| ||||||||||||||||||   |||||||||||| ||||    
T  34954035 atttctataacacaagataaaataaagtcaagctgttttcatataatctgt 34954085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Original strand, 42809253 - 42809303
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    |||||||||||| ||||||||||| ||| |||  |||||||||||||||||    
T  42809253 atttctataacaaaagataaaatatagttaaattgttttcatataagctgt 42809303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 54775075 - 54775125
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    |||| |||||||||||| ||||||||||||||||||| | |||| ||||||    
T  54775075 aagttatttctataacaaaagataaaataaagtcaaaccatttttatataa 54775125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 15304465 - 15304420
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    |||||||||||| ||||||||||||||| |||  ||||||||||||    
T  15304465 atttctataacaaaagataaaataaagttaaattgttttcatataa 15304420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 20192724 - 20192679
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    |||| ||||||| |||||||||||||||||||  ||||||||||||    
T  20192724 atttatataacaaaagataaaataaagtcaaacagttttcatataa 20192679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 776
Target Start/End: Original strand, 20267105 - 20267138
Alignment:
Q  743 tcatttctataacagaagataaaataaagtcaaa 776  Q
    |||||||||||||| |||||||||||||||||||    
T  20267105 tcatttctataacaaaagataaaataaagtcaaa 20267138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 702
Target Start/End: Original strand, 21574373 - 21574406
Alignment:
Q  669 tgtttggataaactgcttaattaagtgcttatag 702  Q
    |||||||||||||| |||||||||||||||||||    
T  21574373 tgtttggataaactacttaattaagtgcttatag 21574406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 23785202 - 23785255
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| ||||||| | ||||||||||||||||||||||  || ||||||||||||    
T  23785202 aagttatttctacagcagaagataaaataaagtcaaactgtattcatataagct 23785255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 795
Target Start/End: Original strand, 42808932 - 42808981
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    ||||||||||| ||||||||||||||| |||  ||||| |||||||||||    
T  42808932 tttctataacaaaagataaaataaagttaaattgtttttatataagctgt 42808981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 27523 - 27573
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  27523 aagttatttctataacagaagataaaataaagtcaaattgttttcatataa 27573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 745 - 795
Target Start/End: Complemental strand, 41701559 - 41701509
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||||||||||    
T  41701559 atttatataacaaaagataaaataaagtcaaatcgttttcatataagctgt 41701509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 29374005 - 29373957
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||||||    
T  29374005 atttctataacagaagataaaataatgtcaaaatgtattcatataagct 29373957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 746 - 793
Target Start/End: Original strand, 53626729 - 53626776
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  53626729 tttctataacaaaagataaaataaattcaaaatgttttcatataagct 53626776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 30024647 - 30024700
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| |||||||||||| ||||||||||||||| |||  |||||||||||||||    
T  30024647 aagttatttctataacaaaagataaaataaagtaaaattgttttcatataagct 30024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 4071834 - 4071882
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||||||||| |||||||||||||||||||   ||||||||||||||    
T  4071834 atttctataacaaaagataaaataaagtcaaattattttcatataagct 4071882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 54325155 - 54325107
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||||| ||| |||||||||||||||||||  |||||||||||||||    
T  54325155 atttctattacaaaagataaaataaagtcaaactgttttcatataagct 54325107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 793
Target Start/End: Complemental strand, 54327566 - 54327519
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    ||||||||||| ||||||||| |||||||||  |||||||||||||||    
T  54327566 tttctataacaaaagataaaacaaagtcaaactgttttcatataagct 54327519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Complemental strand, 6360824 - 6360774
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    |||| |||||||| |||||||||||||||||| | |||||||||| |||||    
T  6360824 atttttataacaggagataaaataaagtcaaatctttttcatatacgctgt 6360774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 854
Target Start/End: Original strand, 19422365 - 19422482
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagct-caaaaagcctatggacat 836  Q
    |||| |||||||||||| |||||| ||||||||||||   ||||||||||| || || |||| ||  |||| ||||||| |  ||||||| |||| ||||    
T  19422365 aagttatttctataacaaaagatataataaagtcaaacatttttcatataaactatcctggagagcttatggaaataagttgaaaaaagcgtatgcacat 19422464  T
Q  837 gtcataagccatttccat 854  Q
    ||||||||| ||| ||||    
T  19422465 gtcataagctattaccat 19422482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Complemental strand, 22684634 - 22684584
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    |||||||||||| | | |||||||||||||||  |||||||||||||||||    
T  22684634 atttctataacaaacggtaaaataaagtcaaattgttttcatataagctgt 22684584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Original strand, 47800582 - 47800632
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    |||||||||||| ||||||||||||||| |||| |||||  ||||||||||    
T  47800582 atttctataacaaaagataaaataaagttaaaatgtttttgtataagctgt 47800632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 702
Target Start/End: Original strand, 33640989 - 33641022
Alignment:
Q  669 tgtttggataaactgcttaattaagtgcttatag 702  Q
    ||||||||||||| ||||||||||||||||||||    
T  33640989 tgtttggataaacagcttaattaagtgcttatag 33641022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 44119285 - 44119232
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| ||||||||| || ||||||||| |||||||| | |||||||||||||||    
T  44119285 aagttatttctatagcaaaagataaaacaaagtcaatatgttttcatataagct 44119232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 49219086 - 49219139
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| |||||||||||| || ||||||||||||||||   ||||||||||||||    
T  49219086 aagttatttctataacaaaatataaaataaagtcaaattattttcatataagct 49219139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 14295458 - 14295506
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||||    
T  14295458 atttctataacaaaagataaaataaagtcaaactgttttcatataagct 14295506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 750 - 793
Target Start/End: Complemental strand, 583886 - 583843
Alignment:
Q  750 tataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  583886 tataacagaagataaaataaagtcaaactgttttcatataagct 583843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 28586884 - 28586839
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||    
T  28586884 atttctataacaaaagataaaataaagtcaaactgttttcatataa 28586839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 823
Target Start/End: Complemental strand, 29117048 - 29116968
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa 823  Q
    |||||||||||| |||||||||||||||||||  |||||| |||||||| || || ||||  |||| ||||||||| ||||    
T  29117048 atttctataacaaaagataaaataaagtcaaactgttttcgtataagctatcctgaaaagcttatgcaaataagctgaaaa 29116968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 787
Target Start/End: Complemental strand, 27106046 - 27105998
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaa-cgttttcata 787  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||||||||    
T  27106046 aagtcatttctataacaaaagataaaataaagttaaaagcgttttcata 27105998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 35135780 - 35135732
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||||||||| |||||||||||||||||||   ||||||||||||||    
T  35135780 atttctataacaaaagataaaataaagtcaaactattttcatataagct 35135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 787
Target Start/End: Complemental strand, 7096245 - 7096203
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcata 787  Q
    |||||||||||| ||||||||||||||||||| | ||||||||    
T  7096245 atttctataacaaaagataaaataaagtcaaaccattttcata 7096203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 791
Target Start/End: Complemental strand, 37063192 - 37063146
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||||||||||| |||||||||||||||||||   ||||||||||||    
T  37063192 atttctataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 912772 - 912719
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaa-cgttttcatataagc 792  Q
    |||| |||||||||||| || |||||||||||||||||  ||||||||||||||    
T  912772 aagttatttctataacacaatataaaataaagtcaaaattgttttcatataagc 912719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 786
Target Start/End: Original strand, 10303753 - 10303794
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcat 786  Q
    |||||||||||| |||||||||||||||||||  ||||||||    
T  10303753 atttctataacaaaagataaaataaagtcaaattgttttcat 10303794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 20982253 - 20982208
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    |||||||||||| | ||||||||||||||||  |||||||||||||    
T  20982253 atttctataacaaaggataaaataaagtcaacccgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 37526322 - 37526269
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| |||||||||| | |||||||||| || |||||| |||||||||||||||    
T  37526322 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagct 37526269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 37588483 - 37588430
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| |||||||||| | |||||||||| || |||||| |||||||||||||||    
T  37588483 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagct 37588430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 37690760 - 37690707
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| |||||||||| | |||||||||| || |||||| |||||||||||||||    
T  37690760 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagct 37690707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 745 - 796
Target Start/End: Original strand, 25867038 - 25867089
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtc 796  Q
    |||||||||||| ||||| ||||||||||||||  |||||||||||||||||    
T  25867038 atttctataacaaaagatgaaataaagtcaaaatattttcatataagctgtc 25867089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 795
Target Start/End: Complemental strand, 29262991 - 29262942
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    ||||||||| |||||||||||||||||||||   ||||||||||||||||    
T  29262991 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 29262942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 750 - 845
Target Start/End: Original strand, 20672729 - 20672825
Alignment:
Q  750 tataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa-agcctatggacatgtcataagc 845  Q
    ||||||| |||||||||||||||||||  |||||  |||||||| || |||| ||  |||||||||||||| |||| ||| |||| |||||||||||||    
T  20672729 tataacaaaagataaaataaagtcaaactgtttt--tataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagc 20672825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 791
Target Start/End: Original strand, 29699201 - 29699252
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||| |||||||||||| |||||||||||||||||||| ||| |||| ||||    
T  29699201 aagttatttctataacaaaagataaaataaagtcaaaatgttgtcatctaag 29699252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 796
Target Start/End: Original strand, 44348439 - 44348490
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtc 796  Q
    |||||||||||| |||||  |||||||||||||  |||||||||||||||||    
T  44348439 atttctataacaaaagatgtaataaagtcaaaatattttcatataagctgtc 44348490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 778
Target Start/End: Original strand, 926439 - 926472
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaac 778  Q
    |||||||||||| |||||||||||||||||||||    
T  926439 atttctataacacaagataaaataaagtcaaaac 926472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 791
Target Start/End: Original strand, 2100758 - 2100803
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||||||| || ||||||||||||||||||||  ||||||||||||    
T  2100758 tttctatagcaaaagataaaataaagtcaaaatattttcatataag 2100803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 13561430 - 13561385
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    ||||||||||||||| || |||||||||||||  ||||||||||||    
T  13561430 atttctataacagaaaattaaataaagtcaaattgttttcatataa 13561385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 740 - 791
Target Start/End: Complemental strand, 39591590 - 39591539
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||| |||||||||||| |||||||||||||||||||  |||||||||||||    
T  39591590 aagttatttctataacaaaagataaaataaagtcaaattgttttcatataag 39591539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 745 - 817
Target Start/End: Original strand, 42656467 - 42656541
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagc 817  Q
    |||||||||||| ||||||||||||||||||| | ||||  |||||||| ||||||| ||  |||||||||||||    
T  42656467 atttctataacaaaagataaaataaagtcaaatcatttttgtataagctatcttggagagcttatgaaaataagc 42656541  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 35536059 - 35536105
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||    
T  35536059 atttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 792
Target Start/End: Original strand, 1417216 - 1417263
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagc 792  Q
    |||| ||||||| |||||||||||||||||||  ||||||||||||||    
T  1417216 atttatataacaaaagataaaataaagtcaaattgttttcatataagc 1417263  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 2999143 - 2999190
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacg-ttttcatataag 791  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||    
T  2999143 atttctataacaaaagataaaataaagtcaaaccgtttttcatataag 2999190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 1418383 - 1418429
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||||||||||| |||||| ||||||||||| | |||||||||||||    
T  1418383 atttctataacaaaagatataataaagtcaatatgttttcatataag 1418429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 749 - 791
Target Start/End: Complemental strand, 5006623 - 5006581
Alignment:
Q  749 ctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||||||| |||||||||||||||||||  |||||||||||||    
T  5006623 ctataacaaaagataaaataaagtcaaactgttttcatataag 5006581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 5373177 - 5373223
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||||||||||| |||||||||||||||| |||| |||| |||||||    
T  5373177 atttctataacaaaagataaaataaagtccaaacatttttatataag 5373223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Complemental strand, 27121704 - 27121654
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    |||||||||| | | |||||||||||||||||  |||||||||||||||||    
T  27121704 atttctataataaatgataaaataaagtcaaattgttttcatataagctgt 27121654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 791
Target Start/End: Complemental strand, 30456568 - 30456522
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    ||||||| |||| |||||||||||||||||||  |||||||||||||    
T  30456568 atttctaaaacaaaagataaaataaagtcaaattgttttcatataag 30456522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 3802257 - 3802212
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    |||||||||| | ||| ||||||||||||||| |||||||||||||    
T  3802257 atttctataataaaaggtaaaataaagtcaaatcgttttcatataa 3802212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 793
Target Start/End: Original strand, 23918912 - 23918957
Alignment:
Q  748 tctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    ||||| ||| |||||||||||||||||||  |||||||||||||||    
T  23918912 tctattacaaaagataaaataaagtcaaattgttttcatataagct 23918957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 794
Target Start/End: Complemental strand, 43318646 - 43318597
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagctg 794  Q
    |||||||||||| | |||||||||||||||||  ||| ||||||||||||    
T  43318646 atttctataacaaatgataaaataaagtcaaattgttatcatataagctg 43318597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 787
Target Start/End: Complemental strand, 44239093 - 44239056
Alignment:
Q  750 tataacagaagataaaataaagtcaaaacgttttcata 787  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  44239093 tataacaaaagataaaataaagtcaaaatgttttcata 44239056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 792
Target Start/End: Original strand, 46825052 - 46825097
Alignment:
Q  747 ttctataacagaagataaaataaagtcaaaacgttttcatataagc 792  Q
    |||||||| | |||||||||||||||||||  ||||||||||||||    
T  46825052 ttctataaaaaaagataaaataaagtcaaattgttttcatataagc 46825097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 702
Target Start/End: Complemental strand, 47616811 - 47616778
Alignment:
Q  669 tgtttggataaactgcttaattaagtgcttatag 702  Q
    |||||||| |||||||||||||||||||||||||    
T  47616811 tgtttggagaaactgcttaattaagtgcttatag 47616778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 33192145 - 33192191
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||    
T  33192145 atttctataacataagataaaataaagtcaaactgttttcatataag 33192191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 37053546 - 37053592
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||    
T  37053546 atttctataacagaaaataaaataaagtcaaactgttttcatataag 37053592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 787
Target Start/End: Original strand, 15171203 - 15171244
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcata 787  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  15171203 tttctataacagaagataaattaaagtcaaaatgttttcata 15171244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 9478251 - 9478299
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    ||||||||||||| |||||||||||| ||||||  ||||||||||||||    
T  9478251 atttctataacagtagataaaataaactcaaaatattttcatataagct 9478299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 17952819 - 17952771
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||||||||| |||||||||||||||||||   ||||||||||||||    
T  17952819 atttctataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 795
Target Start/End: Original strand, 3458604 - 3458659
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    |||| |||| ||||||| |||||||||||||||||||   ||||||||||||||||    
T  3458604 aagttatttttataacaaaagataaaataaagtcaaacttttttcatataagctgt 3458659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 706
Target Start/End: Original strand, 12785751 - 12785790
Alignment:
Q  667 cttgtttggataaactgcttaattaagtgcttatagctta 706  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  12785751 cttgtttggttaaaatgcttaattaagtgcttatagctta 12785790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 10231842 - 10231796
Alignment:
Q  394 cagtgtaaaactttttacacttacgatgtatcaaaataaaactctat 440  Q
    ||||||||||||||||||||| || || ||||||||| |||||||||    
T  10231842 cagtgtaaaactttttacactgacaatatatcaaaattaaactctat 10231796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 787
Target Start/End: Complemental strand, 32098426 - 32098384
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcata 787  Q
    |||||||||||| |||||||||||||||||||  |||||||||    
T  32098426 atttctataacaaaagataaaataaagtcaaagtgttttcata 32098384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 10143119 - 10143172
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| |||||||||||| |||||||||| ||||||||  ||||| |||||||||    
T  10143119 aagttatttctataacaaaagataaaattaagtcaaactgtttttatataagct 10143172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 28803629 - 28803576
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||| ||||| |||||| |||||||||||||||||||  | |||||||||||||    
T  28803629 aagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagct 28803576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 795
Target Start/End: Complemental strand, 27693556 - 27693507
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    ||||||||| |||||||||||||||||||||   ||||||||||||||||    
T  27693556 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 27693507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 29274347 - 29274299
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    ||||||||| || |||||||||||||||||||  |||||||||||||||    
T  29274347 atttctatagcaaaagataaaataaagtcaaattgttttcatataagct 29274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 776
Target Start/End: Original strand, 29269848 - 29269879
Alignment:
Q  745 atttctataacagaagataaaataaagtcaaa 776  Q
    ||||||||||||||||||||||||||||||||    
T  29269848 atttctataacagaagataaaataaagtcaaa 29269879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 5328921 - 5328971
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    |||| |||||||||||| ||||||||||||||||||| | |||| ||||||    
T  5328921 aagttatttctataacaaaagataaaataaagtcaaaccatttttatataa 5328971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 793
Target Start/End: Original strand, 7713983 - 7714025
Alignment:
Q  751 ataacagaagataaaataaagtcaaaacgttttcatataagct 793  Q
    |||||| |||||||||||||||||||  |||||||||||||||    
T  7713983 ataacaaaagataaaataaagtcaaattgttttcatataagct 7714025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 790
Target Start/End: Complemental strand, 24836322 - 24836272
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataa 790  Q
    |||| |||||||||||| |||||||||||||||||||  |||||| |||||    
T  24836322 aagttatttctataacaaaagataaaataaagtcaaattgttttcgtataa 24836272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 795
Target Start/End: Complemental strand, 27595684 - 27595635
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    ||||||||| | |||||||||||||||||||   ||||||||||||||||    
T  27595684 tttctataataaaagataaaataaagtcaaattattttcatataagctgt 27595635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 795
Target Start/End: Original strand, 29940749 - 29940798
Alignment:
Q  746 tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt 795  Q
    ||||||||||| ||||||||||||||||||   |||||||| ||||||||    
T  29940749 tttctataacaaaagataaaataaagtcaatttgttttcatttaagctgt 29940798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 791
Target Start/End: Complemental strand, 9898 - 9847
Alignment:
Q  740 aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag 791  Q
    |||| |||||||||||| || ||||||| ||||||||| |||||||||||||    
T  9898 aagttatttctataacaaaaaataaaattaagtcaaaaagttttcatataag 9847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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