View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4385-Insertion-2 (Length: 935)
Name: NF4385-Insertion-2
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4385-Insertion-2 |
 |  |
|
[»] chr1 (14 HSPs) |
 |  |
|
[»] scaffold0024 (1 HSPs) |
 |  |  |
|
[»] scaffold0508 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 881; Significance: 0; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 881; E-Value: 0
Query Start/End: Original strand, 8 - 935
Target Start/End: Complemental strand, 1879882 - 1878954
Alignment:
Q |
8 |
agacctcctgttggctctcagcctaatactatggaaaccaagtctagtggaagaatggaacttccagaggtaattgatgcatccatttgtcactacattc |
107 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
T |
1879882 |
agacctcctgttggctctcagcctaatactatggaaaccaagtctagtggaagaatggaacttccagaggtaatagatgcatccatttgtcactacattc |
1879783 |
T |
 |
Q |
108 |
tttgtttttgcagatacaggaaccttactgcttaaataatttctctgcaggacctttttagtacacgatacttatccggccctgcagcacatgcaggctg |
207 |
Q |
|
|
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
1879782 |
tttgttttcgcagatacaggaaccttactacctaaataatttctctgcaggacctttttagtacacgatacttatccggccctgcagcacatgcaggctg |
1879683 |
T |
 |
Q |
208 |
gcagaatcttcaacatcatgtcatgggatatggcatgcagtattaccctaatgcaatggtacactctttgcatctcattatcaattttgatttaattcat |
307 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
1879682 |
gcagaatcttcaacatcatgtcatgggatatggcatgcagtattaccctaatgcaatggtacactctttgcatctcattatcaattttgatttaattcat |
1879583 |
T |
 |
Q |
308 |
acacaccgttagtgtaaatattttttacagtttcaatcaatcacattcgtcagattataaagaacatttgacttcatatacattttcagtgtaaaacttt |
407 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
T |
1879582 |
acacaccgttagtgtaaatattttttacagtttcaatcaatcatattcgtcagattataaagaacatttgacttcatatacattttcagtgtaaaaattt |
1879483 |
T |
 |
Q |
408 |
ttacacttacgatgtatcaaaataaaactctatcaagtttagttttagtttttcttggttttgatatcaatgctgattgaatgatatgatgtttcatttg |
507 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
1879482 |
ttacacttacgatgtatcaaaataaaactctatcaagtttagttttagtttttcttggttttgatatcaatgctgattgaatgatatgatgtttcatttg |
1879383 |
T |
 |
Q |
508 |
cagcctcctccagcacttccaactgcaccaaaatacatgaacccgtttgacataactgaagggagaagtctagcgcatgcaacatcggtatgtacaacat |
607 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
1879382 |
cagcctcctccagcacttccaactgcaccaaaatacatgaacccgtttgacataactgaagggagaagtctagcgcatgcaacatcggtatgtacaacat |
1879283 |
T |
 |
Q |
608 |
taaactaatatattatgctgtagtatgccttgatatggttctattgaaaacattgtaatcttgtttggataaactgcttaattaagtgcttatagcttat |
707 |
Q |
|
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
1879282 |
taaactaatatattatgctgtagtatgccttgctatgattctattgaaaacattgtaatcttgtttggataaactgcttaattaagtgcttatagcttat |
1879183 |
T |
 |
Q |
708 |
agcataaacacttatcacatagtgcttacctgaagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaagtat |
807 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
T |
1879182 |
agcataaacacttatcacatagtgcttacctgaagtcatttctataacagaagataaaataaagtcaaaatgttttcatataagctgtcttggaaagtat |
1879083 |
T |
 |
Q |
808 |
gaaaataagctcaaaaagcctatggacatgtcataagccatttccatttactctctgaaacagtctttcaagtgcatgtgttttacttagcttgaagtag |
907 |
Q |
|
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
1879082 |
gaaaataagctgaaaaagcctatggacatgtcataagccatttccatttactctctgaaacagtctttcaagtgcatgtgttttacttagcttgaagtag |
1878983 |
T |
 |
Q |
908 |
aagttttcttcaaaga-ctctctctgcag |
935 |
Q |
|
|
|||||||||||||||| |||||||||||| |
|
|
T |
1878982 |
aagttttcttcaaagacctctctctgcag |
1878954 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 15360846 - 15360894
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
T |
15360846 |
atttctataacaaaagataaaataaagtcaaactgttttcatataagct |
15360894 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 779 - 845
Target Start/End: Complemental strand, 28689516 - 28689447
Alignment:
Q |
779 |
gttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa-agcctatggacatgtcataagc |
845 |
Q |
|
|
||||||||||||||| |||||||||| |||||||||||||| |||| | | |||||||||||||||||| |
|
|
T |
28689516 |
gttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagc |
28689447 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 854
Target Start/End: Complemental strand, 46499972 - 46499860
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa-agcctatggacatgtcat |
841 |
Q |
|
|
|||||||||| | ||||||||||||||||||| ||||| || |||||| || |||| || |||||||||||| | |||| || || ||||||||||| |
|
|
T |
46499972 |
atttctataagaaaagataaaataaagtcaaattgtttttatttaagctttcatggagagcttatgaaaataaggttaaaacagtttagggacatgtcat |
46499873 |
T |
 |
Q |
842 |
aagccatttccat |
854 |
Q |
|
|
||||| ||||||| |
|
|
T |
46499872 |
aagccgtttccat |
46499860 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 49517017 - 49517070
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| |||||||||||| ||||||||||||||||||| |||||||| |||||| |
|
|
T |
49517017 |
aagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagct |
49517070 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 787
Target Start/End: Complemental strand, 14737828 - 14737781
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcata |
787 |
Q |
|
|
|||| |||||||||||| ||||||||||||||||||| ||||||||| |
|
|
T |
14737828 |
aagttatttctataacaaaagataaaataaagtcaaattgttttcata |
14737781 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 793
Target Start/End: Complemental strand, 25006151 - 25006104
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||||||||||| | ||||||||||||||| ||||||||||||||| |
|
|
T |
25006151 |
tttctataacagacggtaaaataaagtcaaattgttttcatataagct |
25006104 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 793
Target Start/End: Complemental strand, 27738297 - 27738250
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||| |||| ||||||||||||||||||| ||||||||||||||| |
|
|
T |
27738297 |
tttctacaacaaaagataaaataaagtcaaattgttttcatataagct |
27738250 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 793
Target Start/End: Complemental strand, 44032116 - 44032069
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
T |
44032116 |
tttctataacaaaagctaaaataaagtcaaattgttttcatataagct |
44032069 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 3259622 - 3259676
Alignment:
Q |
296 |
gatttaattcatacacaccgttagtgtaaatattttttacagtttcaatcaatca |
350 |
Q |
|
|
||||||||||||| ||||| |||||||||| | ||||||| ||||||||||||| |
|
|
T |
3259622 |
gatttaattcatatacaccattagtgtaaagagcttttacactttcaatcaatca |
3259676 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 739 - 793
Target Start/End: Complemental strand, 44936714 - 44936660
Alignment:
Q |
739 |
gaagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||| |||||||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
T |
44936714 |
gaagttatttctataacaaaagataagataaagtcaaactattttcatataagct |
44936660 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 4200176 - 4200229
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| |||| ||||||| |||||||||||||||||| ||||||||||||||| |
|
|
T |
4200176 |
aagttatttttataacaaaagataaaataaagtcaagttgttttcatataagct |
4200229 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 703
Target Start/End: Original strand, 16322720 - 16322757
Alignment:
Q |
666 |
tcttgtttggataaactgcttaattaagtgcttatagc |
703 |
Q |
|
|
|||||||||||||||| |||||||||||||||||||| |
|
|
T |
16322720 |
tcttgtttggataaacaacttaattaagtgcttatagc |
16322757 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 773
Target Start/End: Complemental strand, 42169665 - 42169632
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtc |
773 |
Q |
|
|
|||| ||||||||||||||||||||||||||||| |
|
|
T |
42169665 |
aagttatttctataacagaagataaaataaagtc |
42169632 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 745 - 801
Target Start/End: Complemental strand, 49587034 - 49586978
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttgga |
801 |
Q |
|
|
|||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
T |
49587034 |
atttctataacaaaagataaaataaagtcaaactgttttcatataagctatcttgga |
49586978 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 1395623 - 1395671
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
T |
1395623 |
atttctataacaaaagataaaataaagtcaaattattttcatataagct |
1395671 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 42038941 - 42038989
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||||||||| ||||| |||||||||||| |||||||||||||||| |
|
|
T |
42038941 |
atttctataacaaaagatctaataaagtcaaaccgttttcatataagct |
42038989 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 791
Target Start/End: Complemental strand, 10101599 - 10101548
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||| |||||||||||| ||||||||||||||| ||| ||||||||||||| |
|
|
T |
10101599 |
aagttatttctataacaaaagataaaataaagttaaattgttttcatataag |
10101548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 791
Target Start/End: Complemental strand, 10212524 - 10212473
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||| |||||||||||| ||||||||||||||| ||| ||||||||||||| |
|
|
T |
10212524 |
aagttatttctataacaaaagataaaataaagttaaattgttttcatataag |
10212473 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 750 - 792
Target Start/End: Original strand, 23793545 - 23793587
Alignment:
Q |
750 |
tataacagaagataaaataaagtcaaaacgttttcatataagc |
792 |
Q |
|
|
||||||| |||||||||||||||||||| | |||||||||||| |
|
|
T |
23793545 |
tataacaaaagataaaataaagtcaaaatgatttcatataagc |
23793587 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Original strand, 34954035 - 34954085
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
|||||||||||| |||||||||||||||||| |||||||||||| |||| |
|
|
T |
34954035 |
atttctataacacaagataaaataaagtcaagctgttttcatataatctgt |
34954085 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Original strand, 42809253 - 42809303
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
|||||||||||| ||||||||||| ||| ||| ||||||||||||||||| |
|
|
T |
42809253 |
atttctataacaaaagataaaatatagttaaattgttttcatataagctgt |
42809303 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 54775075 - 54775125
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
|||| |||||||||||| ||||||||||||||||||| | |||| |||||| |
|
|
T |
54775075 |
aagttatttctataacaaaagataaaataaagtcaaaccatttttatataa |
54775125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 15304465 - 15304420
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
|||||||||||| ||||||||||||||| ||| |||||||||||| |
|
|
T |
15304465 |
atttctataacaaaagataaaataaagttaaattgttttcatataa |
15304420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 20192724 - 20192679
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
|||| ||||||| ||||||||||||||||||| |||||||||||| |
|
|
T |
20192724 |
atttatataacaaaagataaaataaagtcaaacagttttcatataa |
20192679 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 776
Target Start/End: Original strand, 20267105 - 20267138
Alignment:
Q |
743 |
tcatttctataacagaagataaaataaagtcaaa |
776 |
Q |
|
|
|||||||||||||| ||||||||||||||||||| |
|
|
T |
20267105 |
tcatttctataacaaaagataaaataaagtcaaa |
20267138 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 702
Target Start/End: Original strand, 21574373 - 21574406
Alignment:
Q |
669 |
tgtttggataaactgcttaattaagtgcttatag |
702 |
Q |
|
|
|||||||||||||| ||||||||||||||||||| |
|
|
T |
21574373 |
tgtttggataaactacttaattaagtgcttatag |
21574406 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 23785202 - 23785255
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| ||||||| | |||||||||||||||||||||| || |||||||||||| |
|
|
T |
23785202 |
aagttatttctacagcagaagataaaataaagtcaaactgtattcatataagct |
23785255 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 795
Target Start/End: Original strand, 42808932 - 42808981
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
||||||||||| ||||||||||||||| ||| ||||| ||||||||||| |
|
|
T |
42808932 |
tttctataacaaaagataaaataaagttaaattgtttttatataagctgt |
42808981 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 27523 - 27573
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
|||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
27523 |
aagttatttctataacagaagataaaataaagtcaaattgttttcatataa |
27573 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 745 - 795
Target Start/End: Complemental strand, 41701559 - 41701509
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
|||| ||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
T |
41701559 |
atttatataacaaaagataaaataaagtcaaatcgttttcatataagctgt |
41701509 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 29374005 - 29373957
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||||||||||||||||||||||| ||||||| || |||||||||||| |
|
|
T |
29374005 |
atttctataacagaagataaaataatgtcaaaatgtattcatataagct |
29373957 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 746 - 793
Target Start/End: Original strand, 53626729 - 53626776
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||||||||| ||||||||||||| |||||| ||||||||||||||| |
|
|
T |
53626729 |
tttctataacaaaagataaaataaattcaaaatgttttcatataagct |
53626776 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 30024647 - 30024700
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| |||||||||||| ||||||||||||||| ||| ||||||||||||||| |
|
|
T |
30024647 |
aagttatttctataacaaaagataaaataaagtaaaattgttttcatataagct |
30024700 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 4071834 - 4071882
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
T |
4071834 |
atttctataacaaaagataaaataaagtcaaattattttcatataagct |
4071882 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 54325155 - 54325107
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||||| ||| ||||||||||||||||||| ||||||||||||||| |
|
|
T |
54325155 |
atttctattacaaaagataaaataaagtcaaactgttttcatataagct |
54325107 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 793
Target Start/End: Complemental strand, 54327566 - 54327519
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||||||||| ||||||||| ||||||||| ||||||||||||||| |
|
|
T |
54327566 |
tttctataacaaaagataaaacaaagtcaaactgttttcatataagct |
54327519 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Complemental strand, 6360824 - 6360774
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
|||| |||||||| |||||||||||||||||| | |||||||||| ||||| |
|
|
T |
6360824 |
atttttataacaggagataaaataaagtcaaatctttttcatatacgctgt |
6360774 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 854
Target Start/End: Original strand, 19422365 - 19422482
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagct-caaaaagcctatggacat |
836 |
Q |
|
|
|||| |||||||||||| |||||| |||||||||||| ||||||||||| || || |||| || |||| ||||||| | ||||||| |||| |||| |
|
|
T |
19422365 |
aagttatttctataacaaaagatataataaagtcaaacatttttcatataaactatcctggagagcttatggaaataagttgaaaaaagcgtatgcacat |
19422464 |
T |
 |
Q |
837 |
gtcataagccatttccat |
854 |
Q |
|
|
||||||||| ||| |||| |
|
|
T |
19422465 |
gtcataagctattaccat |
19422482 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Complemental strand, 22684634 - 22684584
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
|||||||||||| | | ||||||||||||||| ||||||||||||||||| |
|
|
T |
22684634 |
atttctataacaaacggtaaaataaagtcaaattgttttcatataagctgt |
22684584 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Original strand, 47800582 - 47800632
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
|||||||||||| ||||||||||||||| |||| ||||| |||||||||| |
|
|
T |
47800582 |
atttctataacaaaagataaaataaagttaaaatgtttttgtataagctgt |
47800632 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 702
Target Start/End: Original strand, 33640989 - 33641022
Alignment:
Q |
669 |
tgtttggataaactgcttaattaagtgcttatag |
702 |
Q |
|
|
||||||||||||| |||||||||||||||||||| |
|
|
T |
33640989 |
tgtttggataaacagcttaattaagtgcttatag |
33641022 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 44119285 - 44119232
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| ||||||||| || ||||||||| |||||||| | ||||||||||||||| |
|
|
T |
44119285 |
aagttatttctatagcaaaagataaaacaaagtcaatatgttttcatataagct |
44119232 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 49219086 - 49219139
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| |||||||||||| || |||||||||||||||| |||||||||||||| |
|
|
T |
49219086 |
aagttatttctataacaaaatataaaataaagtcaaattattttcatataagct |
49219139 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 14295458 - 14295506
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
T |
14295458 |
atttctataacaaaagataaaataaagtcaaactgttttcatataagct |
14295506 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 750 - 793
Target Start/End: Complemental strand, 583886 - 583843
Alignment:
Q |
750 |
tataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
T |
583886 |
tataacagaagataaaataaagtcaaactgttttcatataagct |
583843 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 28586884 - 28586839
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
|||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
T |
28586884 |
atttctataacaaaagataaaataaagtcaaactgttttcatataa |
28586839 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 823
Target Start/End: Complemental strand, 29117048 - 29116968
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa |
823 |
Q |
|
|
|||||||||||| ||||||||||||||||||| |||||| |||||||| || || |||| |||| ||||||||| |||| |
|
|
T |
29117048 |
atttctataacaaaagataaaataaagtcaaactgttttcgtataagctatcctgaaaagcttatgcaaataagctgaaaa |
29116968 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 787
Target Start/End: Complemental strand, 27106046 - 27105998
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaa-cgttttcata |
787 |
Q |
|
|
||||||||||||||||| ||||||||||||||| |||| |||||||||| |
|
|
T |
27106046 |
aagtcatttctataacaaaagataaaataaagttaaaagcgttttcata |
27105998 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 35135780 - 35135732
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
T |
35135780 |
atttctataacaaaagataaaataaagtcaaactattttcatataagct |
35135732 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 787
Target Start/End: Complemental strand, 7096245 - 7096203
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcata |
787 |
Q |
|
|
|||||||||||| ||||||||||||||||||| | |||||||| |
|
|
T |
7096245 |
atttctataacaaaagataaaataaagtcaaaccattttcata |
7096203 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 791
Target Start/End: Complemental strand, 37063192 - 37063146
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
T |
37063192 |
atttctataacaaaagataaaataaagtcaaactattttcatataag |
37063146 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 912772 - 912719
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaa-cgttttcatataagc |
792 |
Q |
|
|
|||| |||||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
T |
912772 |
aagttatttctataacacaatataaaataaagtcaaaattgttttcatataagc |
912719 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 786
Target Start/End: Original strand, 10303753 - 10303794
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcat |
786 |
Q |
|
|
|||||||||||| ||||||||||||||||||| |||||||| |
|
|
T |
10303753 |
atttctataacaaaagataaaataaagtcaaattgttttcat |
10303794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 20982253 - 20982208
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
|||||||||||| | |||||||||||||||| ||||||||||||| |
|
|
T |
20982253 |
atttctataacaaaggataaaataaagtcaacccgttttcatataa |
20982208 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 37526322 - 37526269
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| |||||||||| | |||||||||| || |||||| ||||||||||||||| |
|
|
T |
37526322 |
aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagct |
37526269 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 37588483 - 37588430
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| |||||||||| | |||||||||| || |||||| ||||||||||||||| |
|
|
T |
37588483 |
aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagct |
37588430 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 37690760 - 37690707
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| |||||||||| | |||||||||| || |||||| ||||||||||||||| |
|
|
T |
37690760 |
aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagct |
37690707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 745 - 796
Target Start/End: Original strand, 25867038 - 25867089
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtc |
796 |
Q |
|
|
|||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
T |
25867038 |
atttctataacaaaagatgaaataaagtcaaaatattttcatataagctgtc |
25867089 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 795
Target Start/End: Complemental strand, 29262991 - 29262942
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
T |
29262991 |
tttctataatagaagataaaataaagtcaaattattttcatataagctgt |
29262942 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 750 - 845
Target Start/End: Original strand, 20672729 - 20672825
Alignment:
Q |
750 |
tataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa-agcctatggacatgtcataagc |
845 |
Q |
|
|
||||||| ||||||||||||||||||| ||||| |||||||| || |||| || |||||||||||||| |||| ||| |||| ||||||||||||| |
|
|
T |
20672729 |
tataacaaaagataaaataaagtcaaactgtttt--tataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagc |
20672825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 791
Target Start/End: Original strand, 29699201 - 29699252
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||| |||||||||||| |||||||||||||||||||| ||| |||| |||| |
|
|
T |
29699201 |
aagttatttctataacaaaagataaaataaagtcaaaatgttgtcatctaag |
29699252 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 796
Target Start/End: Original strand, 44348439 - 44348490
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtc |
796 |
Q |
|
|
|||||||||||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
T |
44348439 |
atttctataacaaaagatgtaataaagtcaaaatattttcatataagctgtc |
44348490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 778
Target Start/End: Original strand, 926439 - 926472
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaac |
778 |
Q |
|
|
|||||||||||| ||||||||||||||||||||| |
|
|
T |
926439 |
atttctataacacaagataaaataaagtcaaaac |
926472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 791
Target Start/End: Original strand, 2100758 - 2100803
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||||||| || |||||||||||||||||||| |||||||||||| |
|
|
T |
2100758 |
tttctatagcaaaagataaaataaagtcaaaatattttcatataag |
2100803 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 13561430 - 13561385
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
||||||||||||||| || ||||||||||||| |||||||||||| |
|
|
T |
13561430 |
atttctataacagaaaattaaataaagtcaaattgttttcatataa |
13561385 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 740 - 791
Target Start/End: Complemental strand, 39591590 - 39591539
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||| |||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
T |
39591590 |
aagttatttctataacaaaagataaaataaagtcaaattgttttcatataag |
39591539 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 745 - 817
Target Start/End: Original strand, 42656467 - 42656541
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgtcttggaaag--tatgaaaataagc |
817 |
Q |
|
|
|||||||||||| ||||||||||||||||||| | |||| |||||||| ||||||| || ||||||||||||| |
|
|
T |
42656467 |
atttctataacaaaagataaaataaagtcaaatcatttttgtataagctatcttggagagcttatgaaaataagc |
42656541 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 35536059 - 35536105
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
T |
35536059 |
atttctataacataagataaaataaagtcaaattgttttcatataag |
35536105 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 792
Target Start/End: Original strand, 1417216 - 1417263
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagc |
792 |
Q |
|
|
|||| ||||||| ||||||||||||||||||| |||||||||||||| |
|
|
T |
1417216 |
atttatataacaaaagataaaataaagtcaaattgttttcatataagc |
1417263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 2999143 - 2999190
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacg-ttttcatataag |
791 |
Q |
|
|
|||||||||||| ||||||||||||||||||| || |||||||||||| |
|
|
T |
2999143 |
atttctataacaaaagataaaataaagtcaaaccgtttttcatataag |
2999190 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 1418383 - 1418429
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||||||||||| |||||| ||||||||||| | ||||||||||||| |
|
|
T |
1418383 |
atttctataacaaaagatataataaagtcaatatgttttcatataag |
1418429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 749 - 791
Target Start/End: Complemental strand, 5006623 - 5006581
Alignment:
Q |
749 |
ctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||||||| ||||||||||||||||||| ||||||||||||| |
|
|
T |
5006623 |
ctataacaaaagataaaataaagtcaaactgttttcatataag |
5006581 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 5373177 - 5373223
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||||||||||| |||||||||||||||| |||| |||| ||||||| |
|
|
T |
5373177 |
atttctataacaaaagataaaataaagtccaaacatttttatataag |
5373223 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 795
Target Start/End: Complemental strand, 27121704 - 27121654
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
|||||||||| | | ||||||||||||||||| ||||||||||||||||| |
|
|
T |
27121704 |
atttctataataaatgataaaataaagtcaaattgttttcatataagctgt |
27121654 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 791
Target Start/End: Complemental strand, 30456568 - 30456522
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
||||||| |||| ||||||||||||||||||| ||||||||||||| |
|
|
T |
30456568 |
atttctaaaacaaaagataaaataaagtcaaattgttttcatataag |
30456522 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 790
Target Start/End: Complemental strand, 3802257 - 3802212
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
|||||||||| | ||| ||||||||||||||| ||||||||||||| |
|
|
T |
3802257 |
atttctataataaaaggtaaaataaagtcaaatcgttttcatataa |
3802212 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 793
Target Start/End: Original strand, 23918912 - 23918957
Alignment:
Q |
748 |
tctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||| ||| ||||||||||||||||||| ||||||||||||||| |
|
|
T |
23918912 |
tctattacaaaagataaaataaagtcaaattgttttcatataagct |
23918957 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 794
Target Start/End: Complemental strand, 43318646 - 43318597
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagctg |
794 |
Q |
|
|
|||||||||||| | ||||||||||||||||| ||| |||||||||||| |
|
|
T |
43318646 |
atttctataacaaatgataaaataaagtcaaattgttatcatataagctg |
43318597 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 787
Target Start/End: Complemental strand, 44239093 - 44239056
Alignment:
Q |
750 |
tataacagaagataaaataaagtcaaaacgttttcata |
787 |
Q |
|
|
||||||| |||||||||||||||||||| ||||||||| |
|
|
T |
44239093 |
tataacaaaagataaaataaagtcaaaatgttttcata |
44239056 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 792
Target Start/End: Original strand, 46825052 - 46825097
Alignment:
Q |
747 |
ttctataacagaagataaaataaagtcaaaacgttttcatataagc |
792 |
Q |
|
|
|||||||| | ||||||||||||||||||| |||||||||||||| |
|
|
T |
46825052 |
ttctataaaaaaagataaaataaagtcaaattgttttcatataagc |
46825097 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 702
Target Start/End: Complemental strand, 47616811 - 47616778
Alignment:
Q |
669 |
tgtttggataaactgcttaattaagtgcttatag |
702 |
Q |
|
|
|||||||| ||||||||||||||||||||||||| |
|
|
T |
47616811 |
tgtttggagaaactgcttaattaagtgcttatag |
47616778 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 33192145 - 33192191
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
T |
33192145 |
atttctataacataagataaaataaagtcaaactgttttcatataag |
33192191 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 37053546 - 37053592
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
T |
37053546 |
atttctataacagaaaataaaataaagtcaaactgttttcatataag |
37053592 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 787
Target Start/End: Original strand, 15171203 - 15171244
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcata |
787 |
Q |
|
|
|||||||||||||||||||| ||||||||||| ||||||||| |
|
|
T |
15171203 |
tttctataacagaagataaattaaagtcaaaatgttttcata |
15171244 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Original strand, 9478251 - 9478299
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||||||||||| |||||||||||| |||||| |||||||||||||| |
|
|
T |
9478251 |
atttctataacagtagataaaataaactcaaaatattttcatataagct |
9478299 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 17952819 - 17952771
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
T |
17952819 |
atttctataacaaaagataaaataaagtcaaactattttcatataagct |
17952771 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 795
Target Start/End: Original strand, 3458604 - 3458659
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
|||| |||| ||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
T |
3458604 |
aagttatttttataacaaaagataaaataaagtcaaacttttttcatataagctgt |
3458659 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 706
Target Start/End: Original strand, 12785751 - 12785790
Alignment:
Q |
667 |
cttgtttggataaactgcttaattaagtgcttatagctta |
706 |
Q |
|
|
||||||||| |||| ||||||||||||||||||||||||| |
|
|
T |
12785751 |
cttgtttggttaaaatgcttaattaagtgcttatagctta |
12785790 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 10231842 - 10231796
Alignment:
Q |
394 |
cagtgtaaaactttttacacttacgatgtatcaaaataaaactctat |
440 |
Q |
|
|
||||||||||||||||||||| || || ||||||||| ||||||||| |
|
|
T |
10231842 |
cagtgtaaaactttttacactgacaatatatcaaaattaaactctat |
10231796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 787
Target Start/End: Complemental strand, 32098426 - 32098384
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcata |
787 |
Q |
|
|
|||||||||||| ||||||||||||||||||| ||||||||| |
|
|
T |
32098426 |
atttctataacaaaagataaaataaagtcaaagtgttttcata |
32098384 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 10143119 - 10143172
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| |||||||||||| |||||||||| |||||||| ||||| ||||||||| |
|
|
T |
10143119 |
aagttatttctataacaaaagataaaattaagtcaaactgtttttatataagct |
10143172 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Complemental strand, 28803629 - 28803576
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||| ||||| |||||| ||||||||||||||||||| | ||||||||||||| |
|
|
T |
28803629 |
aagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagct |
28803576 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 795
Target Start/End: Complemental strand, 27693556 - 27693507
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
T |
27693556 |
tttctataatagaagataaaataaagtcaaattattttcatataagctgt |
27693507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 793
Target Start/End: Complemental strand, 29274347 - 29274299
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
T |
29274347 |
atttctatagcaaaagataaaataaagtcaaattgttttcatataagct |
29274299 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 776
Target Start/End: Original strand, 29269848 - 29269879
Alignment:
Q |
745 |
atttctataacagaagataaaataaagtcaaa |
776 |
Q |
|
|
|||||||||||||||||||||||||||||||| |
|
|
T |
29269848 |
atttctataacagaagataaaataaagtcaaa |
29269879 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 5328921 - 5328971
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
|||| |||||||||||| ||||||||||||||||||| | |||| |||||| |
|
|
T |
5328921 |
aagttatttctataacaaaagataaaataaagtcaaaccatttttatataa |
5328971 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 793
Target Start/End: Original strand, 7713983 - 7714025
Alignment:
Q |
751 |
ataacagaagataaaataaagtcaaaacgttttcatataagct |
793 |
Q |
|
|
|||||| ||||||||||||||||||| ||||||||||||||| |
|
|
T |
7713983 |
ataacaaaagataaaataaagtcaaattgttttcatataagct |
7714025 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 790
Target Start/End: Complemental strand, 24836322 - 24836272
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataa |
790 |
Q |
|
|
|||| |||||||||||| ||||||||||||||||||| |||||| ||||| |
|
|
T |
24836322 |
aagttatttctataacaaaagataaaataaagtcaaattgttttcgtataa |
24836272 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 795
Target Start/End: Complemental strand, 27595684 - 27595635
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
||||||||| | ||||||||||||||||||| |||||||||||||||| |
|
|
T |
27595684 |
tttctataataaaagataaaataaagtcaaattattttcatataagctgt |
27595635 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 795
Target Start/End: Original strand, 29940749 - 29940798
Alignment:
Q |
746 |
tttctataacagaagataaaataaagtcaaaacgttttcatataagctgt |
795 |
Q |
|
|
||||||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
T |
29940749 |
tttctataacaaaagataaaataaagtcaatttgttttcatttaagctgt |
29940798 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0508 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0508
Description:
Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 791
Target Start/End: Complemental strand, 9898 - 9847
Alignment:
Q |
740 |
aagtcatttctataacagaagataaaataaagtcaaaacgttttcatataag |
791 |
Q |
|
|
|||| |||||||||||| || ||||||| ||||||||| ||||||||||||| |
|
|
T |
9898 |
aagttatttctataacaaaaaataaaattaagtcaaaaagttttcatataag |
9847 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University